Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB0R79_RS18550 Genome accession   NZ_CP160211
Coordinates   3680311..3681000 (-) Length   229 a.a.
NCBI ID   WP_197061611.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM236     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3675311..3686000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R79_RS18515 (AB0R79_18515) fliW 3675402..3675833 (-) 432 WP_015240684.1 flagellar assembly protein FliW -
  AB0R79_RS18520 (AB0R79_18520) - 3675863..3676432 (-) 570 WP_007407476.1 DUF6470 family protein -
  AB0R79_RS18525 (AB0R79_18525) flgL 3676523..3677440 (-) 918 WP_015240685.1 flagellar hook-associated protein FlgL -
  AB0R79_RS18530 (AB0R79_18530) flgK 3677452..3678969 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  AB0R79_RS18535 (AB0R79_18535) - 3678985..3679467 (-) 483 WP_167340892.1 flagellar protein FlgN -
  AB0R79_RS18540 (AB0R79_18540) flgM 3679482..3679748 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R79_RS18545 (AB0R79_18545) - 3679818..3680237 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  AB0R79_RS18550 (AB0R79_18550) comFC 3680311..3681000 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  AB0R79_RS18555 (AB0R79_18555) - 3681006..3681290 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R79_RS18560 (AB0R79_18560) comFA 3681348..3682733 (-) 1386 WP_167340893.1 DEAD/DEAH box helicase Machinery gene
  AB0R79_RS18565 (AB0R79_18565) - 3682842..3683690 (-) 849 WP_044801920.1 DegV family protein -
  AB0R79_RS18570 (AB0R79_18570) degU 3683788..3684477 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R79_RS18575 (AB0R79_18575) degS 3684554..3685717 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25229.83 Da        Isoelectric Point: 8.0779

>NTDB_id=1019038 AB0R79_RS18550 WP_197061611.1 3680311..3681000(-) (comFC) [Bacillus velezensis strain JM236]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1019038 AB0R79_RS18550 WP_197061611.1 3680311..3681000(-) (comFC) [Bacillus velezensis strain JM236]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCTGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment