Detailed information NTG1018859

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABXR98_RS03220
• Genome accession: NZ_CP160206
• Coordinates: 665370..666221 (+)
• Length: 283 a.a.
• NCBI ID: WP_370385764.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 660370..671221

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXR98_RS03205 (ABXR98_00610)	recJ	660504..662201 (+)	1698	WP_374695112.1	single-stranded-DNA-specific exonuclease RecJ	-
ABXR98_RS03210 (ABXR98_00605)	pilF	662403..664082 (+)	1680	WP_025329864.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABXR98_RS03215 (ABXR98_00600)	pilG	664131..665363 (+)	1233	WP_025329863.1	type II secretion system F family protein	Machinery gene
ABXR98_RS03220 (ABXR98_00595)	pilD	665370..666221 (+)	852	WP_370385764.1	A24 family peptidase	Machinery gene
ABXR98_RS03225 (ABXR98_00590)	coaE	666218..666832 (+)	615	WP_084551530.1	dephospho-CoA kinase	-
ABXR98_RS03230 (ABXR98_00580)	zapD	666838..667590 (+)	753	WP_025329860.1	cell division protein ZapD	-
ABXR98_RS03235 (ABXR98_00570)	yacG	667590..667787 (+)	198	WP_025329859.1	DNA gyrase inhibitor YacG	-
ABXR98_RS03240 (ABXR98_00565)	-	667834..668754 (+)	921	WP_370385763.1	ABC transporter ATP-binding protein	-
ABXR98_RS03245 (ABXR98_00560)	-	668751..669512 (+)	762	WP_279038174.1	ABC transporter permease	-
ABXR98_RS03250 (ABXR98_00555)	-	669567..669815 (+)	249	WP_025329856.1	BolA family protein	-
ABXR98_RS03255 (ABXR98_00550)	murA	669855..671114 (+)	1260	WP_084547387.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31284.29 Da
• Isoelectric Point: 8.2995

>NTDB_id=1018859 ABXR98_RS03220 WP_370385764.1 665370..666221(+) (pilD) [Snodgrassella alvi strain Amel03]
MLTDTLFFSVIALISGCAVGSFLNVVIYRLPIMMERSWLAEARMALQLPAEHTSRFNLCVPHSACPHCQHKIRWWQNIPL
VSYILLRGRCASCSASISPRYFCVELLTGIAFAAVVWRYDVTPVAAGGLILTAALIALTFIDAETQLLPDQITLPLLWLG
LLFNWYCEFVPLASAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGASALPLIVFMAAIVGIIASLIL
RVARSQPMAFGPALAIAGWIVWMTNSQINQLIHWWLRLSGFST

Nucleotide

• Length: 852 bp

>NTDB_id=1018859 ABXR98_RS03220 WP_370385764.1 665370..666221(+) (pilD) [Snodgrassella alvi strain Amel03]
ATGTTAACTGATACTCTGTTTTTTAGCGTCATTGCATTAATATCGGGATGTGCTGTTGGCAGTTTTCTGAATGTAGTGAT
CTATCGTTTACCCATTATGATGGAACGAAGCTGGCTGGCAGAAGCACGAATGGCATTGCAACTGCCTGCAGAACACACCA
GTCGCTTTAATCTCTGTGTTCCGCATTCAGCCTGCCCGCACTGTCAGCATAAAATCCGCTGGTGGCAGAATATACCTCTT
GTCAGTTATATACTGCTACGCGGACGCTGTGCTTCATGTTCAGCATCCATCAGCCCGCGCTATTTTTGTGTGGAATTATT
AACCGGTATTGCATTTGCTGCAGTAGTCTGGCGTTATGATGTCACACCTGTTGCTGCGGGCGGTCTGATACTGACTGCCG
CACTGATTGCACTGACCTTTATAGATGCTGAAACCCAGCTGTTGCCTGACCAAATCACCTTACCTCTACTCTGGCTGGGT
TTACTGTTTAACTGGTATTGTGAGTTTGTTCCCTTAGCTTCTGCTGTCTGGGGTGCTGCATTAGGCTATCTGAGCTTGTG
GTCACTTTTCTGGTTATTCAAACTACTAACCGGTAAAGATGGTATGGGTTATGGTGATTTTAAACTACTGGCTGCCCTTG
GTGCGTGGATGGGTGCTTCTGCATTACCTTTAATTGTATTTATGGCAGCAATTGTCGGTATTATTGCTTCACTTATTCTC
AGAGTTGCCCGCAGCCAGCCTATGGCTTTTGGTCCGGCACTGGCCATTGCAGGCTGGATTGTGTGGATGACAAACAGTCA
GATTAATCAGTTGATTCACTGGTGGCTGCGTCTTTCTGGGTTTAGTACATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-119)

• Type IV leader peptidase family (Peptidase_A24) (130-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	56.343	94.7	0.534
pilD	Vibrio cholerae strain A1552	49.462	98.587	0.488
pilD	Acinetobacter baumannii D1279779	50.554	95.76	0.484
pilD	Acinetobacter nosocomialis M2	50.185	95.76	0.481
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449