Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQL08_RS09195 Genome accession   NZ_LS483336
Coordinates   1791614..1792210 (-) Length   198 a.a.
NCBI ID   WP_023611209.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1786614..1797210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL08_RS09160 (NCTC12046_01816) - 1786674..1786979 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQL08_RS09165 (NCTC12046_01817) ruvX 1786991..1787410 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DQL08_RS09170 (NCTC12046_01818) - 1787407..1787676 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQL08_RS09175 (NCTC12046_01819) spx 1787790..1788188 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQL08_RS09180 (NCTC12046_01820) recA 1788479..1789615 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  DQL08_RS09185 (NCTC12046_01821) cinA 1789704..1790975 (-) 1272 WP_023611245.1 competence/damage-inducible protein A Machinery gene
  DQL08_RS09190 (NCTC12046_01822) - 1791044..1791604 (-) 561 WP_023611248.1 DNA-3-methyladenine glycosylase I -
  DQL08_RS09195 (NCTC12046_01823) ruvA 1791614..1792210 (-) 597 WP_023611209.1 Holliday junction branch migration protein RuvA Machinery gene
  DQL08_RS09200 (NCTC12046_01824) - 1792212..1793432 (-) 1221 WP_002991361.1 MDR family MFS transporter -
  DQL08_RS09205 (NCTC12046_01825) hexB 1793443..1795425 (-) 1983 WP_023611310.1 DNA mismatch repair endonuclease MutL Machinery gene
  DQL08_RS09210 (NCTC12046_01826) - 1795520..1796665 (-) 1146 WP_021775554.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21837.16 Da        Isoelectric Point: 5.8282

>NTDB_id=1018316 DQL08_RS09195 WP_023611209.1 1791614..1792210(-) (ruvA) [Streptococcus pyogenes strain NCTC12046]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAYLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1018316 DQL08_RS09195 WP_023611209.1 1791614..1792210(-) (ruvA) [Streptococcus pyogenes strain NCTC12046]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTTACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCTGGCATT
GGCCCCACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAGCGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae R6

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae D39

66.497

99.495

0.662
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424