Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABZU12_RS01615 Genome accession   NZ_CP160088
Coordinates   331720..332235 (+) Length   171 a.a.
NCBI ID   WP_006586053.1    Uniprot ID   A0AAP3M390
Organism   Lactobacillus mulieris strain CM2267_MRS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 326720..337235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU12_RS01600 (ABZU12_01600) gyrB 326741..328696 (+) 1956 WP_006586050.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ABZU12_RS01605 (ABZU12_01605) gyrA 328708..331185 (+) 2478 WP_006586051.1 DNA gyrase subunit A -
  ABZU12_RS01610 (ABZU12_01610) rpsF 331390..331683 (+) 294 WP_006586052.1 30S ribosomal protein S6 -
  ABZU12_RS01615 (ABZU12_01615) ssb 331720..332235 (+) 516 WP_006586053.1 single-stranded DNA-binding protein Machinery gene
  ABZU12_RS01620 (ABZU12_01620) rpsR 332259..332495 (+) 237 WP_006585377.1 30S ribosomal protein S18 -
  ABZU12_RS01625 (ABZU12_01625) - 332628..334646 (+) 2019 WP_006586054.1 DHH family phosphoesterase -
  ABZU12_RS01630 (ABZU12_01630) rplI 334666..335118 (+) 453 WP_006586055.1 50S ribosomal protein L9 -
  ABZU12_RS01635 (ABZU12_01635) dnaB 335134..336501 (+) 1368 WP_006586056.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18651.29 Da        Isoelectric Point: 4.7213

>NTDB_id=1017880 ABZU12_RS01615 WP_006586053.1 331720..332235(+) (ssb) [Lactobacillus mulieris strain CM2267_MRS1]
MINRVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYANAQGERGADFISCVIWRKAAENFCNFTNKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVIVDNFSLLESRKDREARSQNGGYAPQNNGSSYAGNSNQNTNFQANNSAPNTNNAAPQDPFADSGS
TIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1017880 ABZU12_RS01615 WP_006586053.1 331720..332235(+) (ssb) [Lactobacillus mulieris strain CM2267_MRS1]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGCACTACTGGTAGTGGGATTAGCGTTGC
TACTTTTACATTGGCAGTTGATCGTCAATATGCTAATGCACAAGGTGAACGCGGGGCTGATTTTATTAGCTGTGTAATCT
GGAGAAAGGCTGCAGAAAATTTCTGCAATTTCACTAATAAAGGTTCATTAGTTGGTATTGATGGCCGAATCCAAACCAGA
AGCTACGATAATAAGGATGGGCAAAGAGTTTATGTGACTGAAGTTATTGTTGATAATTTCTCACTACTTGAATCACGTAA
AGATCGTGAAGCTCGTTCCCAAAATGGTGGCTATGCGCCACAAAATAACGGAAGTTCATATGCTGGAAATAGTAATCAAA
ATACTAATTTCCAAGCGAATAATAGTGCTCCAAATACCAATAATGCTGCACCACAGGATCCATTTGCTGATTCAGGTTCA
ACAATTGATATTTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.162

100

0.649
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.601

100

0.532

Multiple sequence alignment