Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   W903_RS08560 Genome accession   NZ_CP006910
Coordinates   1682469..1682978 (-) Length   169 a.a.
NCBI ID   WP_000392202.1    Uniprot ID   -
Organism   Streptococcus agalactiae CNCTC 10/84     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1677469..1687978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W903_RS08535 (W903_1747) tsaD 1677968..1678978 (-) 1011 WP_000655094.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  W903_RS08540 (W903_1748) rimI 1679058..1679465 (-) 408 WP_000445947.1 ribosomal protein S18-alanine N-acetyltransferase -
  W903_RS08545 (W903_1749) tsaB 1679467..1680159 (-) 693 WP_000978605.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  W903_RS08550 (W903_1750) - 1680338..1680568 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  W903_RS08555 (W903_1751) rnjA 1680622..1682301 (+) 1680 WP_000065498.1 ribonuclease J1 -
  W903_RS08560 (W903_1752) lytF 1682469..1682978 (-) 510 WP_000392202.1 CHAP domain-containing protein Regulator
  W903_RS08565 (W903_1753) glnA 1683126..1684472 (-) 1347 WP_000156217.1 type I glutamate--ammonia ligase -
  W903_RS08570 (W903_1754) - 1684506..1684877 (-) 372 WP_000664338.1 MerR family transcriptional regulator -
  W903_RS08575 (W903_1755) - 1684957..1685496 (-) 540 WP_000854121.1 aromatic acid exporter family protein -
  W903_RS08580 (W903_1756) - 1685759..1686955 (-) 1197 WP_001096753.1 phosphoglycerate kinase -
  W903_RS08585 (W903_1757) - 1687090..1687959 (-) 870 WP_000844833.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18332.26 Da        Isoelectric Point: 4.4055

>NTDB_id=101760 W903_RS08560 WP_000392202.1 1682469..1682978(-) (lytF) [Streptococcus agalactiae CNCTC 10/84]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=101760 W903_RS08560 WP_000392202.1 1682469..1682978(-) (lytF) [Streptococcus agalactiae CNCTC 10/84]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAAATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGAACACAACCTCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414

Multiple sequence alignment