Detailed information NTG1017377

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB0W04_RS04330
• Genome accession: NZ_CP160049
• Coordinates: 959711..961084 (-)
• Length: 457 a.a.
• NCBI ID: WP_111108606.1
• Uniprot ID: -
• Organism: Stenotrophomonas maltophilia strain SM922
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 954711..966084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0W04_RS04310	pilC	955050..956309 (-)	1260	WP_049403032.1	type II secretion system F family protein	Machinery gene
AB0W04_RS04315	-	956662..957084 (+)	423	WP_049403031.1	pilin	-
AB0W04_RS04320	-	957195..957644 (+)	450	WP_275043866.1	pilin	-
AB0W04_RS04325	pilB	957867..959600 (+)	1734	WP_049403029.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB0W04_RS04330	pilR	959711..961084 (-)	1374	WP_111108606.1	sigma-54 dependent transcriptional regulator	Regulator
AB0W04_RS04335	-	961145..962758 (-)	1614	WP_005414304.1	PAS domain-containing sensor histidine kinase	-
AB0W04_RS04340	sucC	963116..964285 (+)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
AB0W04_RS04345	sucD	964307..965182 (+)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49545.79 Da
• Isoelectric Point: 6.4407

>NTDB_id=1017377 AB0W04_RS04330 WP_111108606.1 959711..961084(-) (pilR) [Stenotrophomonas maltophilia strain SM922]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRTPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=1017377 AB0W04_RS04330 WP_111108606.1 959711..961084(-) (pilR) [Stenotrophomonas maltophilia strain SM922]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCCGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAGGGTGCACG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCGCACGCTGACAAGCCTGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGTGCGGC
CAACGAGGAGCCAGTGGATGTCCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAGGACGGCCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
ACTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTACGCCGGGCAGTGCCGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGCGCCGCACTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.555	99.344	0.621
pilR	Acinetobacter baumannii strain A118	47.948	100	0.486