Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ABZM26_RS19885 Genome accession   NZ_CP160044
Coordinates   4409835..4412069 (-) Length   744 a.a.
NCBI ID   WP_366300490.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain GZ-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4404835..4417069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM26_RS19850 murB 4405213..4406232 (-) 1020 WP_136492924.1 UDP-N-acetylmuramate dehydrogenase -
  ABZM26_RS19855 - 4406229..4406693 (-) 465 WP_366300488.1 low molecular weight protein-tyrosine-phosphatase -
  ABZM26_RS19860 kdsB 4406693..4407457 (-) 765 WP_024013932.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABZM26_RS19865 - 4407454..4407639 (-) 186 WP_003179363.1 Trm112 family protein -
  ABZM26_RS19870 lpxK 4407663..4408673 (-) 1011 WP_366300489.1 tetraacyldisaccharide 4'-kinase -
  ABZM26_RS19875 - 4408673..4409101 (-) 429 WP_016771006.1 biopolymer transporter ExbD -
  ABZM26_RS19880 exbB 4409098..4409733 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABZM26_RS19885 comA 4409835..4412069 (-) 2235 WP_366300490.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABZM26_RS19890 - 4412206..4412724 (+) 519 WP_016770668.1 DUF2062 domain-containing protein -
  ABZM26_RS19895 - 4412876..4413655 (-) 780 WP_056788203.1 ABC transporter permease -
  ABZM26_RS19900 - 4413652..4414584 (-) 933 WP_016771010.1 ABC transporter ATP-binding protein -
  ABZM26_RS19905 - 4414717..4415340 (-) 624 WP_123443610.1 glutathione S-transferase -
  ABZM26_RS19910 - 4415384..4416043 (-) 660 WP_071173232.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81651.87 Da        Isoelectric Point: 9.6770

>NTDB_id=1017285 ABZM26_RS19885 WP_366300490.1 4409835..4412069(-) (comA) [Pseudomonas atacamensis strain GZ-3]
MRTGMMALAVGLLAPVLLPALPPVGLLVVLPVVALMLLPFRSYPLAFLLFGFTWACFSAQWALTDRLPPGLDGETRWLEG
RVVGLPQHNDGVVRFELADARSRHEKLPSLLRLAWYAGPAVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEARYAWRDGVRQRLLAADAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPLRWPWLPWACGLAFTAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWCPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPFWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLA
LPPQERIEEGRADVWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMQGLKVHRVVSGDVPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIVANGERLLLTGDIDIRAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=1017285 ABZM26_RS19885 WP_366300490.1 4409835..4412069(-) (comA) [Pseudomonas atacamensis strain GZ-3]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTATTGCCGGCCTTGCCGCCGGTCGGCTTGCT
GGTAGTGCTGCCAGTGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCATTGGCGTTTTTGCTGTTTGGTTTCACGT
GGGCTTGTTTCAGTGCGCAGTGGGCGCTGACTGACCGCTTGCCACCGGGTCTTGACGGCGAAACCCGTTGGCTTGAAGGG
CGGGTGGTCGGCTTGCCGCAACACAACGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGTTCACGCCACGAAAAGCT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGGCGGTGAATAGTGGTGAGCGTTGGCGTCTGGCGGTGAAATTGA
AGCGCCCGGGTGGCTTGCTCAACCCGGACGCTTTCGATTACGAGGCCTGGCTGCTGGCGCAACGGATCGGGGCGACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGTATGCATGGCGCGACGGCGTTCGCCAGCGCCTGCTGGCGGCCGA
TGCGCAAGGACGAGAGGGCGCGCTGGCGGCGCTGGTGCTTGGTGACGGTTCAGGCCTCAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGCCAGCACATCGGCTTGCTCGCCGCAGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGTTGCGCTGGCCATGGCTGCCGTGGGCGTGCGGCCTGGCCTTCACGGC
GGCGCTGGGTTACGGCCTGCTCGCCGGTTTCGATGTGCCAGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGCCTGCGTTTTCGTCATCTCGGCGCATGGTGCCCGTTATTGCTGGCATTCAATGGCGTGCTGTTGTTCGATCCGCTG
GCCAGTTTGCGTCCAGGTTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACTTTCGGCGGGCGGCTGGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCAATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCGATCAGCGTCAGCGGGCCGGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGGCTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCTGCCGCCATTCCATTTTGGGCTTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGAGGCGTGCCAATGCGACCGTTGGGCTGGCCGCTACTGTTGCTCCTGGCA
TTGCCGCCTCAAGAGCGAATAGAAGAAGGGCGGGCCGATGTCTGGCAACTCGACGTCGGCCAAGGCCTGGCCATCCTCAT
CCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGAGTGGTACTGC
CAGCGTTACGTAAACTTAATGTCCAAGCGCTCGACTTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTAATGCAGGGATTGAAGGTGCACCGCGTGGTCAGCGGCGATGTGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTTTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTATTGCAGATCGTGGCCAACGGTGAACGCCTGCTGCTCACCGGCGATATCGACATTCGCGCCGAG
CGCGTTCTGCTCGACAGCCCGCTGGCCGTGCCGACGCAGTGGCTGCAATCGCCCCATCACGGCAGCCGCAGTTCATCATC
GATGGCCCTGCTCAAAGCCTTGCAGCCCGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGCGCGATACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCACCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(24-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.309

96.64

0.602
  comA Ralstonia pseudosolanacearum GMI1000

35.347

100

0.37

Multiple sequence alignment