Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABZM26_RS19880 Genome accession   NZ_CP160044
Coordinates   4409098..4409733 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas atacamensis strain GZ-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4404098..4414733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM26_RS19845 - 4404443..4404913 (-) 471 WP_123443604.1 (2Fe-2S)-binding protein -
  ABZM26_RS19850 murB 4405213..4406232 (-) 1020 WP_136492924.1 UDP-N-acetylmuramate dehydrogenase -
  ABZM26_RS19855 - 4406229..4406693 (-) 465 WP_366300488.1 low molecular weight protein-tyrosine-phosphatase -
  ABZM26_RS19860 kdsB 4406693..4407457 (-) 765 WP_024013932.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABZM26_RS19865 - 4407454..4407639 (-) 186 WP_003179363.1 Trm112 family protein -
  ABZM26_RS19870 lpxK 4407663..4408673 (-) 1011 WP_366300489.1 tetraacyldisaccharide 4'-kinase -
  ABZM26_RS19875 - 4408673..4409101 (-) 429 WP_016771006.1 biopolymer transporter ExbD -
  ABZM26_RS19880 exbB 4409098..4409733 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABZM26_RS19885 comA 4409835..4412069 (-) 2235 WP_366300490.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABZM26_RS19890 - 4412206..4412724 (+) 519 WP_016770668.1 DUF2062 domain-containing protein -
  ABZM26_RS19895 - 4412876..4413655 (-) 780 WP_056788203.1 ABC transporter permease -
  ABZM26_RS19900 - 4413652..4414584 (-) 933 WP_016771010.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=1017284 ABZM26_RS19880 WP_016771007.1 4409098..4409733(-) (exbB) [Pseudomonas atacamensis strain GZ-3]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1017284 ABZM26_RS19880 WP_016771007.1 4409098..4409733(-) (exbB) [Pseudomonas atacamensis strain GZ-3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCGCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCCGGCATGACCACCAATGCTTCGGTATTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGGATTCCAGCGGTGTTCTTCCACCGGTTTTTGCAGCGCCGCATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTAGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment