Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQM44_RS10770 Genome accession   NZ_LS483318
Coordinates   1568365..1569030 (-) Length   221 a.a.
NCBI ID   WP_012767419.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1563365..1574030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS07945 (NCTC5370_01634) - 1566585..1567607 (-) 1023 WP_172449184.1 IS30 family transposase -
  DQM44_RS07950 (NCTC5370_01635) raiA 1567737..1568285 (-) 549 WP_014612499.1 ribosome-associated translation inhibitor RaiA -
  DQM44_RS10770 (NCTC5370_01636) comFC/cflB 1568365..1569030 (-) 666 WP_012767419.1 ComF family protein Machinery gene
  DQM44_RS07960 (NCTC5370_01637) comFA/cflA 1569002..1570327 (-) 1326 WP_065354805.1 DEAD/DEAH box helicase Machinery gene
  DQM44_RS07965 (NCTC5370_01638) - 1570383..1571021 (+) 639 WP_003062333.1 YigZ family protein -
  DQM44_RS07970 (NCTC5370_01639) cysK 1571125..1572060 (+) 936 WP_022555031.1 cysteine synthase A -
  DQM44_RS07975 (NCTC5370_01640) - 1572213..1572572 (-) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  DQM44_RS07980 (NCTC5370_01641) - 1572572..1573972 (-) 1401 WP_022555032.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25364.39 Da        Isoelectric Point: 8.7003

>NTDB_id=1016782 DQM44_RS10770 WP_012767419.1 1568365..1569030(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1016782 DQM44_RS10770 WP_012767419.1 1568365..1569030(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403

Multiple sequence alignment