Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ABYM97_RS16035 Genome accession   NZ_CP159874
Coordinates   3112641..3113072 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain PY79     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3107641..3118072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABYM97_RS15985 (ABYM97_15985) sinI 3107835..3108008 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ABYM97_RS15990 (ABYM97_15990) sinR 3108042..3108377 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ABYM97_RS15995 (ABYM97_15995) tasA 3108470..3109255 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  ABYM97_RS16000 (ABYM97_16000) sipW 3109319..3109891 (-) 573 WP_003246088.1 signal peptidase I SipW -
  ABYM97_RS16005 (ABYM97_16005) tapA 3109875..3110636 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  ABYM97_RS16010 (ABYM97_16010) yqzG 3110908..3111234 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ABYM97_RS16015 (ABYM97_16015) spoIITA 3111276..3111455 (-) 180 WP_003230176.1 YqzE family protein -
  ABYM97_RS16020 (ABYM97_16020) comGG 3111526..3111900 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  ABYM97_RS16025 (ABYM97_16025) comGF 3111901..3112284 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  ABYM97_RS16030 (ABYM97_16030) comGE 3112310..3112657 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ABYM97_RS16035 (ABYM97_16035) comGD 3112641..3113072 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ABYM97_RS16040 (ABYM97_16040) comGC 3113062..3113358 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ABYM97_RS16045 (ABYM97_16045) comGB 3113372..3114409 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  ABYM97_RS16050 (ABYM97_16050) comGA 3114396..3115466 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ABYM97_RS16055 (ABYM97_16055) corA 3115878..3116831 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=1016389 ABYM97_RS16035 WP_004398628.1 3112641..3113072(-) (comGD) [Bacillus subtilis strain PY79]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1016389 ABYM97_RS16035 WP_004398628.1 3112641..3113072(-) (comGD) [Bacillus subtilis strain PY79]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment