Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | ABYM97_RS15990 | Genome accession | NZ_CP159874 |
| Coordinates | 3108042..3108377 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain PY79 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3103042..3113377
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABYM97_RS15970 (ABYM97_15970) | gcvT | 3103634..3104722 (-) | 1089 | WP_004398598.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ABYM97_RS15975 (ABYM97_15975) | hepAA | 3105164..3106837 (+) | 1674 | WP_004398544.1 | SNF2-related protein | - |
| ABYM97_RS15980 (ABYM97_15980) | yqhG | 3106858..3107652 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| ABYM97_RS15985 (ABYM97_15985) | sinI | 3107835..3108008 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| ABYM97_RS15990 (ABYM97_15990) | sinR | 3108042..3108377 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| ABYM97_RS15995 (ABYM97_15995) | tasA | 3108470..3109255 (-) | 786 | WP_004398632.1 | biofilm matrix protein TasA | - |
| ABYM97_RS16000 (ABYM97_16000) | sipW | 3109319..3109891 (-) | 573 | WP_003246088.1 | signal peptidase I SipW | - |
| ABYM97_RS16005 (ABYM97_16005) | tapA | 3109875..3110636 (-) | 762 | WP_004399106.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ABYM97_RS16010 (ABYM97_16010) | yqzG | 3110908..3111234 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| ABYM97_RS16015 (ABYM97_16015) | spoIITA | 3111276..3111455 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| ABYM97_RS16020 (ABYM97_16020) | comGG | 3111526..3111900 (-) | 375 | WP_003230170.1 | ComG operon protein ComGG | Machinery gene |
| ABYM97_RS16025 (ABYM97_16025) | comGF | 3111901..3112284 (-) | 384 | WP_003230168.1 | ComG operon protein ComGF | Machinery gene |
| ABYM97_RS16030 (ABYM97_16030) | comGE | 3112310..3112657 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| ABYM97_RS16035 (ABYM97_16035) | comGD | 3112641..3113072 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| ABYM97_RS16040 (ABYM97_16040) | comGC | 3113062..3113358 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=1016385 ABYM97_RS15990 WP_003226345.1 3108042..3108377(+) (sinR) [Bacillus subtilis strain PY79]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1016385 ABYM97_RS15990 WP_003226345.1 3108042..3108377(+) (sinR) [Bacillus subtilis strain PY79]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |