Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABXT62_RS12360 Genome accession   NZ_CP159826
Coordinates   2722346..2723725 (+) Length   459 a.a.
NCBI ID   WP_415355584.1    Uniprot ID   -
Organism   Halioglobus sp. Uisw_031     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2717346..2728725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXT62_RS12345 (ABXT62_12355) - 2718059..2718928 (+) 870 WP_415355581.1 outer membrane protein assembly factor BamD -
  ABXT62_RS12350 (ABXT62_12360) - 2718953..2720584 (-) 1632 WP_415355582.1 NAD+ synthase -
  ABXT62_RS12355 (ABXT62_12365) - 2720690..2722345 (+) 1656 WP_415355583.1 sensor histidine kinase -
  ABXT62_RS12360 (ABXT62_12370) pilR 2722346..2723725 (+) 1380 WP_415355584.1 sigma-54-dependent transcriptional regulator Regulator
  ABXT62_RS12365 (ABXT62_12375) - 2723732..2724166 (-) 435 WP_415355585.1 type IV pilin protein -
  ABXT62_RS12370 (ABXT62_12380) - 2724194..2724865 (-) 672 WP_415355586.1 PilX N-terminal domain-containing pilus assembly protein -
  ABXT62_RS12375 (ABXT62_12385) - 2724878..2725888 (-) 1011 WP_415355587.1 PilW family protein -
  ABXT62_RS12380 (ABXT62_12390) pilV 2725891..2726541 (-) 651 WP_415355588.1 type IV pilus modification protein PilV -
  ABXT62_RS12385 (ABXT62_12395) - 2726526..2727089 (-) 564 WP_415355589.1 GspH/FimT family pseudopilin -
  ABXT62_RS12390 (ABXT62_12400) ispH 2727215..2728165 (-) 951 WP_415355590.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABXT62_RS12395 (ABXT62_12405) - 2728242..2728691 (-) 450 WP_415355591.1 FKBP-type peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50318.73 Da        Isoelectric Point: 4.8627

>NTDB_id=1016076 ABXT62_RS12360 WP_415355584.1 2722346..2723725(+) (pilR) [Halioglobus sp. Uisw_031]
MATQSVLIVDDEPDIRELLDITLSRMGLQTHSAATLEEAKELVARVQPDLCLTDMRLPDGNGISLVQYIQQEFPHIPVAM
ITAHGSVETAISALKAGAFDFISKPVELENLRRLISSALQLQADTSQAQDALDQGMIGSAPVIQTLRQQISRLARSQAPV
HIHGESGSGKEVVARLIHNNGPRATGAFVAVNCGAIPPELMESELFGHVKGSFTGASQDKEGLFQAASGGTLFLDEVADL
PLAMQVKLLRAIQEKTIRPVGASEEQHTDIRLLSATHKDLANEVEIGNFRQDLYYRINVIDVRVPSLRERLEDVPALTKN
ILTRIGTAHGTAEARLENSAVNALNNYTFPGNVRELENILERALALSEGDSITADDLQFASATIRDSASSQDGNSERSNK
AYESHDAYGDLEGYLEDIEREMISRALEQCRWNKTETAKMLGISFRSLRYRQKKLGLDN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1016076 ABXT62_RS12360 WP_415355584.1 2722346..2723725(+) (pilR) [Halioglobus sp. Uisw_031]
ATGGCCACCCAAAGCGTTTTAATCGTGGATGATGAACCTGATATCAGAGAGTTACTGGATATCACACTAAGCCGTATGGG
CCTTCAAACCCATAGCGCGGCGACACTTGAGGAGGCCAAGGAACTTGTTGCACGGGTACAGCCAGACCTGTGCCTAACCG
ACATGCGTCTGCCCGATGGCAACGGCATCAGCCTGGTGCAGTATATCCAACAGGAATTCCCTCACATTCCCGTTGCTATG
ATTACCGCCCACGGCAGCGTGGAGACAGCCATCTCAGCGCTCAAAGCCGGGGCATTCGATTTTATCAGCAAGCCTGTTGA
ACTGGAGAATTTACGCAGATTGATCAGCTCAGCCCTGCAATTGCAGGCCGACACTAGTCAGGCGCAGGATGCGCTGGATC
AAGGGATGATCGGCAGCGCCCCCGTCATACAAACTCTGCGCCAGCAAATATCCAGACTTGCTCGCAGCCAGGCGCCGGTG
CATATTCACGGCGAGTCCGGCAGTGGCAAGGAGGTTGTGGCGCGTCTAATTCACAATAACGGCCCACGGGCCACCGGCGC
TTTTGTTGCTGTTAACTGTGGCGCGATTCCGCCGGAACTCATGGAGAGCGAGTTATTCGGGCATGTTAAAGGGAGTTTCA
CCGGTGCCAGTCAAGATAAGGAAGGTCTCTTTCAAGCAGCCTCTGGCGGCACTTTGTTTCTCGATGAGGTCGCTGATCTG
CCCCTCGCTATGCAGGTCAAGTTACTGCGCGCGATACAGGAGAAAACAATACGCCCGGTGGGTGCAAGCGAAGAACAGCA
CACTGACATTCGCCTACTGAGCGCGACCCACAAAGATCTAGCCAATGAGGTCGAAATCGGAAATTTCCGACAGGATCTTT
ACTACCGTATAAACGTCATCGACGTAAGAGTCCCCAGTCTTCGCGAGCGGCTAGAGGACGTCCCCGCACTGACCAAAAAT
ATTCTAACTCGCATTGGCACAGCACACGGTACGGCCGAAGCTCGCCTGGAAAATTCTGCTGTAAACGCACTGAACAATTA
CACGTTTCCCGGCAACGTGCGCGAACTGGAAAACATACTAGAGCGCGCTCTCGCGCTTTCCGAGGGCGATAGTATTACCG
CCGATGATCTTCAGTTTGCCAGTGCCACGATAAGAGATTCCGCCTCCTCACAAGATGGAAACAGTGAGCGAAGTAACAAA
GCGTACGAGAGCCATGATGCCTATGGCGATCTCGAAGGCTATCTGGAAGATATAGAGCGGGAGATGATCAGTCGGGCACT
GGAACAGTGCCGCTGGAACAAGACCGAGACCGCGAAAATGCTGGGAATAAGTTTTAGAAGCCTGCGATATAGACAAAAAA
AACTGGGATTGGATAATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Bacterial regulatory protein, Fis family (HTH_8)

(415-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.874

100

0.619
  pilR Acinetobacter baumannii strain A118

50.321

100

0.512
  luxO Vibrio cholerae strain A1552

36.923

99.129

0.366

Multiple sequence alignment