Detailed information NTG1015837

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: ABXT79_RS04930
• Genome accession: NZ_CP159790
• Coordinates: 1055824..1058067 (+)
• Length: 747 a.a.
• NCBI ID: WP_000173776.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain MAK757
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1050824..1063067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXT79_RS04905 (ABXT79_04905)	-	1051288..1051863 (-)	576	WP_000999601.1	PilZ domain-containing protein	-
ABXT79_RS04910 (ABXT79_04910)	lolC	1052039..1053247 (+)	1209	WP_000468900.1	lipoprotein-releasing ABC transporter permease subunit LolC	-
ABXT79_RS04915 (ABXT79_04915)	lolD	1053240..1053926 (+)	687	WP_001061290.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
ABXT79_RS04920 (ABXT79_04920)	lolE	1053927..1055170 (+)	1244	Protein_935	lipoprotein-releasing ABC transporter permease subunit LolE	-
ABXT79_RS04925 (ABXT79_04925)	-	1055285..1055815 (-)	531	WP_001881633.1	DUF2062 domain-containing protein	-
ABXT79_RS04930 (ABXT79_04930)	comEC	1055824..1058067 (+)	2244	WP_000173776.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABXT79_RS04935 (ABXT79_04935)	msbA	1058098..1059846 (+)	1749	WP_000052153.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
ABXT79_RS04940 (ABXT79_04940)	lpxK	1059849..1060856 (+)	1008	WP_001994134.1	tetraacyldisaccharide 4'-kinase	-
ABXT79_RS04945 (ABXT79_04945)	-	1060837..1061016 (+)	180	WP_000350068.1	Trm112 family protein	-
ABXT79_RS04950 (ABXT79_04950)	kdsB	1061016..1061774 (+)	759	WP_000011329.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABXT79_RS04955 (ABXT79_04955)	tnpA	1061943..1062380 (+)	438	WP_000503164.1	IS200/IS605-like element IS1004 family transposase	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 84511.71 Da
• Isoelectric Point: 7.7612

>NTDB_id=1015837 ABXT79_RS04930 WP_000173776.1 1055824..1058067(+) (comEC) [Vibrio cholerae strain MAK757]
MTLLSNYWSLISFSITVLSAPYWPWMPSWGWAWLCLIVMVLLGYHRVGRQFLGFVAAILTIVLQGNLIRDQSNVLYQAGP
DIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNKMTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYM
AQSVVARAVVKPDTAYQIVQESGIRSSLFFELEQLTHTSPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAISGLHI
GIAFSVGYFLGLGMMRFHAQLLWSPFVCGALLAVLYAWLAGFTLPTQRALIMCLLNVALIMLAFPLSALKRILLTLVAVL
LWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVWWKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVI
VPALFLGLLLMVVWPSVAAAYWPWVDWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLLLGMIG
LWWWFPSLTPLWRMDVLDVGHGLAIVIEQDERAIVYDTGSSWPGGSYVQSVIEPMLQQRGLRQVDGVILSHLDNDHAGDW
QGLAERWQPNWIRASQLGTEFMPCIRGESWQWQSLHFTVLWPPQAVSRAYNQHSCVIRMTDTQSNHSVLLSGDVTAMGEW
LLARDGAQLQSEVMIVPHHGSKTSSTAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQISLFFY
LDQLDWFTQRSLGWQPWYRQMLRKGVE

Nucleotide

• Length: 2244 bp

>NTDB_id=1015837 ABXT79_RS04930 WP_000173776.1 1055824..1058067(+) (comEC) [Vibrio cholerae strain MAK757]
ATGACTCTCTTGTCGAATTACTGGTCTCTCATTTCTTTTTCGATCACCGTGCTGTCTGCCCCTTATTGGCCTTGGATGCC
GAGTTGGGGTTGGGCTTGGTTATGCCTTATTGTTATGGTTTTGCTCGGTTATCACCGAGTTGGCCGTCAATTCCTTGGCT
TCGTGGCTGCCATACTAACCATTGTGCTACAGGGCAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAGGGCCG
GATATTATCATAAAAGGCCGTGTTGACAGCTTTTTTACGCAAACTCGTTACGCTTATGAGGGTTTTGTCCTCATTCATGA
AGTGAATGGACAAACCTTAAACAAAATGACTCGCCCTCGCATACGTTTAAGTGCCCCTTTACTGTTACAACCCAATGATC
GCGTCGAATTTTCGGTAACTCTCAAGCCGATAGTGGGTCGACTCAACCAAACCGGCTTTGATTTAGAAGCGCATTACATG
GCGCAATCTGTCGTCGCACGAGCGGTCGTAAAACCTGACACTGCTTATCAAATTGTGCAAGAGAGTGGCATAAGGTCAAG
TTTGTTTTTTGAGCTAGAGCAATTAACGCATACCAGCCCATACCAAGGATTGATCTTAGCCCTGACGTTTGGCGAGCGAA
AAGGTATTGATGAGCAAGAGTGGCAAGCCTTACGCAATAGTGGCTTAATTCATTTAGTGGCCATTTCGGGGCTGCACATT
GGTATCGCTTTTAGCGTGGGGTATTTTCTCGGGCTCGGCATGATGCGTTTTCATGCTCAGTTATTGTGGTCCCCTTTTGT
GTGTGGGGCTTTACTGGCGGTGCTCTACGCTTGGCTGGCCGGATTTACGTTGCCTACTCAGCGTGCATTGATTATGTGCT
TACTCAATGTGGCGTTGATCATGTTGGCTTTTCCTCTTTCCGCGCTCAAGCGGATTCTACTCACCTTAGTCGCGGTCTTG
CTTTGGTCGCCATTCGCCTCACTTTCAAACAGTTTCTGGATGTCGTTTTTGGCGGTCGCGATTGTTCTCTACCAATTAGC
CAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCTCTTCTTTGGGCGCAGGTGTTCCTCGTCTGTTTAATGGCACCGGTCA
CGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGCAGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGGTGATT
GTCCCAGCTTTGTTTTTGGGTCTATTACTCATGGTGGTATGGCCTAGTGTGGCCGCCGCTTACTGGCCTTGGGTGGATTG
GACGTTTTTACCGCTCGATTGGGCTTTGCAGTTTGCCGATGTAGGCTGGTGGGTGGTCCCCAGCAAAGTACAAGGTGTGG
TCGCAGCGAGTGTGGCCATCCTCTTGCTTTATCGATTTATGAGCCTAAAAGCCTGCAGCTTATTATTGGGTATGATTGGC
TTATGGTGGTGGTTTCCCTCTCTCACTCCACTTTGGCGAATGGATGTGCTGGATGTTGGACATGGCTTGGCGATTGTGAT
TGAGCAAGATGAGCGAGCAATTGTCTACGATACAGGCAGCAGTTGGCCGGGAGGCAGCTATGTGCAAAGCGTGATTGAGC
CTATGCTCCAACAGCGGGGGCTACGCCAAGTGGATGGAGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTGATTGG
CAAGGTTTAGCTGAGCGCTGGCAACCCAATTGGATTCGTGCCAGCCAACTCGGGACAGAGTTTATGCCTTGTATCCGTGG
TGAAAGCTGGCAGTGGCAATCTCTCCATTTTACGGTGTTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCAGCATT
CGTGTGTGATTCGTATGACCGATACTCAGTCTAACCATTCTGTACTGCTCTCCGGGGATGTCACAGCCATGGGGGAGTGG
CTGCTTGCTCGCGACGGAGCGCAACTGCAAAGTGAGGTGATGATCGTGCCGCACCACGGCAGTAAAACATCGTCCACCGC
AGAGTTTATTGCCCAAGTGAATCCCAAACTTGCGATTGCTTCTGTGGCGAAAGATAACCGCTGGAATTTGCCTAATCCGC
AAGTCGTGGCACGTTATCAAGCTCAGCAAGTTGAGTGGCTAGATACTGGACACGCTGGGCAAATTAGCCTCTTTTTCTAT
CTAGATCAGCTGGATTGGTTTACCCAGCGTAGCCTTGGCTGGCAGCCTTGGTATAGGCAGATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (208-464)

• Domain of unknown function (DUF4131) (DUF4131) (21-173)

• Metallo-beta-lactamase superfamily (Lactamase_B) (499-679)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio cholerae strain A1552	100	100	1
comEC	Vibrio parahaemolyticus RIMD 2210633	41.215	100	0.418
comEC	Vibrio campbellii strain DS40M4	40.957	100	0.412