Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABXT79_RS01385 Genome accession   NZ_CP159790
Coordinates   298723..299355 (-) Length   210 a.a.
NCBI ID   WP_059279661.1    Uniprot ID   -
Organism   Vibrio cholerae strain MAK757     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 293723..304355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXT79_RS01365 (ABXT79_01365) - 293874..295085 (+) 1212 WP_000215478.1 aspartate aminotransferase family protein -
  ABXT79_RS01370 (ABXT79_01370) astA 295224..296243 (+) 1020 WP_000962042.1 arginine N-succinyltransferase -
  ABXT79_RS01375 (ABXT79_01375) astD 296253..297710 (+) 1458 WP_000150145.1 succinylglutamate-semialdehyde dehydrogenase -
  ABXT79_RS01380 (ABXT79_01380) - 297853..298644 (+) 792 WP_000189091.1 DUF1338 domain-containing protein -
  ABXT79_RS01385 (ABXT79_01385) crp 298723..299355 (-) 633 WP_059279661.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABXT79_RS01390 (ABXT79_01390) - 299598..300467 (-) 870 WP_001274669.1 phosphoribulokinase -
  ABXT79_RS01395 (ABXT79_01395) - 300564..300773 (-) 210 WP_000586562.1 YheU family protein -
  ABXT79_RS01400 (ABXT79_01400) - 300901..301890 (-) 990 WP_000627574.1 hydrolase -
  ABXT79_RS01405 (ABXT79_01405) - 301887..302372 (-) 486 WP_001278735.1 TIGR02444 family protein -
  ABXT79_RS01410 (ABXT79_01410) - 302373..304289 (-) 1917 WP_000627678.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23577.42 Da        Isoelectric Point: 8.6820

>NTDB_id=1015828 ABXT79_RS01385 WP_059279661.1 298723..299355(-) (crp) [Vibrio cholerae strain MAK757]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPGAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1015828 ABXT79_RS01385 WP_059279661.1 298723..299355(-) (crp) [Vibrio cholerae strain MAK757]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACACTGATCCACGCGGGTGAGAAAGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTTATCGGTGAGCTTGGCTTGTTTGAAGAAGGC
CAAGAGCGTACAGCTTGGGTTCGTGCTAAAACACCTTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAATTGAT
CCAAGTAAACCCAGATATCTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGGTGCGATGACTCAC
CCTGACGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.524

100

0.995
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment