NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	DQL62_RS08305	Genome accession	NZ_LS483300
Coordinates	1635891..1636493 (-)	Length	200 a.a.
NCBI ID	WP_000271547.1	Uniprot ID	Q2YT88
Organism	Staphylococcus aureus strain NCTC7485
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1630891..1641493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL62_RS08285 (NCTC7485_01569)	yajC	1632387..1632647 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
DQL62_RS08290 (NCTC7485_01570)	tgt	1632666..1633805 (-)	1140	WP_001112041.1	tRNA guanosine(34) transglycosylase Tgt	-
DQL62_RS08295 (NCTC7485_01571)	queA	1633828..1634853 (-)	1026	WP_111725119.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
DQL62_RS08300 (NCTC7485_01572)	ruvB	1634855..1635859 (-)	1005	WP_001005765.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
DQL62_RS08305 (NCTC7485_01573)	ruvA	1635891..1636493 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
DQL62_RS08310 (NCTC7485_01574)	-	1636507..1636962 (-)	456	WP_000368902.1	ACT domain-containing protein	-
DQL62_RS08315 (NCTC7485_01575)	obgE	1636975..1638267 (-)	1293	WP_045157606.1	GTPase ObgE	-
DQL62_RS08320 (NCTC7485_01576)	rpmA	1638490..1638774 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
DQL62_RS08325 (NCTC7485_01577)	-	1638786..1639106 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
DQL62_RS08330 (NCTC7485_01578)	rplU	1639112..1639420 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
DQL62_RS08335 (NCTC7485_01579)	mreD	1639587..1640117 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
DQL62_RS08340 (NCTC7485_01580)	mreC	1640117..1640959 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
DQL62_RS08345	-	1641157..1641276 (-)	120	WP_000840603.1	hypothetical protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 22262.46 Da Isoelectric Point: 6.0240

                                >NTDB_id=1015683 DQL62_RS08305 WP_000271547.1 1635891..1636493(-) (ruvA) [Staphylococcus aureus strain NCTC7485]

MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI

GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML

ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

Download Length: 603 bp

                                >NTDB_id=1015683 DQL62_RS08305 WP_000271547.1 1635891..1636493(-) (ruvA) [Staphylococcus aureus strain NCTC7485]

ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA

AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG

AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT

GGCCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCTATTGAAAATGAAAATGATAC

GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA

CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA

GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT

TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425

Detailed information NTG1015683