Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQM39_RS09455 Genome accession   NZ_LS483298
Coordinates   1824023..1824619 (-) Length   198 a.a.
NCBI ID   WP_002982180.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8225     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819023..1829619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM39_RS09420 (NCTC8225_01883) - 1819084..1819389 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQM39_RS09425 (NCTC8225_01884) ruvX 1819401..1819820 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DQM39_RS09430 (NCTC8225_01885) - 1819817..1820086 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQM39_RS09435 (NCTC8225_01886) spx 1820199..1820597 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQM39_RS09440 (NCTC8225_01887) recA 1820888..1822024 (-) 1137 WP_002982186.1 recombinase RecA Machinery gene
  DQM39_RS09445 (NCTC8225_01888) cinA 1822113..1823384 (-) 1272 WP_002982184.1 competence/damage-inducible protein A Machinery gene
  DQM39_RS09450 (NCTC8225_01889) - 1823453..1824013 (-) 561 WP_023611248.1 DNA-3-methyladenine glycosylase I -
  DQM39_RS09455 (NCTC8225_01890) ruvA 1824023..1824619 (-) 597 WP_002982180.1 Holliday junction branch migration protein RuvA Machinery gene
  DQM39_RS09460 (NCTC8225_01891) - 1824621..1825841 (-) 1221 WP_002982178.1 MDR family MFS transporter -
  DQM39_RS09465 (NCTC8225_01892) hexB 1825852..1827834 (-) 1983 WP_011018317.1 DNA mismatch repair endonuclease MutL Machinery gene
  DQM39_RS09470 (NCTC8225_01893) - 1827929..1829074 (-) 1146 WP_021775554.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21829.16 Da        Isoelectric Point: 6.2537

>NTDB_id=1015618 DQM39_RS09455 WP_002982180.1 1824023..1824619(-) (ruvA) [Streptococcus pyogenes strain NCTC8225]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1015618 DQM39_RS09455 WP_002982180.1 1824023..1824619(-) (ruvA) [Streptococcus pyogenes strain NCTC8225]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTGTTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae R6

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae D39

66.497

99.495

0.662
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424