Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DQM39_RS03220 Genome accession   NZ_LS483298
Coordinates   590137..590778 (+) Length   213 a.a.
NCBI ID   WP_002983671.1    Uniprot ID   A0A0H2UW05
Organism   Streptococcus pyogenes strain NCTC8225     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 585137..595778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM39_RS03200 (NCTC8225_00644) - 585693..586433 (+) 741 WP_002983660.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  DQM39_RS03205 (NCTC8225_00645) pknB 586430..588328 (+) 1899 WP_111680785.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  DQM39_RS03210 (NCTC8225_00646) liaF 588451..589143 (+) 693 WP_011054833.1 cell wall-active antibiotics response protein LiaF -
  DQM39_RS03215 (NCTC8225_00647) - 589140..590144 (+) 1005 WP_002983669.1 sensor histidine kinase -
  DQM39_RS03220 (NCTC8225_00648) vraR 590137..590778 (+) 642 WP_002983671.1 response regulator transcription factor Regulator
  DQM39_RS03225 (NCTC8225_00649) - 590815..592215 (+) 1401 WP_002983672.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQM39_RS03230 (NCTC8225_00650) - 592215..592592 (+) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  DQM39_RS03235 (NCTC8225_00651) cysK 592610..593551 (-) 942 WP_002983675.1 cysteine synthase A -
  DQM39_RS03240 (NCTC8225_00652) - 593679..594311 (-) 633 WP_002983676.1 YigZ family protein -
  DQM39_RS03245 (NCTC8225_00653) comFA/cflA 594367..595692 (+) 1326 WP_002983681.1 DEAD/DEAH box helicase Machinery gene

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23751.43 Da        Isoelectric Point: 5.1641

>NTDB_id=1015569 DQM39_RS03220 WP_002983671.1 590137..590778(+) (vraR) [Streptococcus pyogenes strain NCTC8225]
MSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASNGREGVDLALALKPDVLVMDLVMPELGGVEATLEVLKKWKEAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1015569 DQM39_RS03220 WP_002983671.1 590137..590778(+) (vraR) [Streptococcus pyogenes strain NCTC8225]
ATGAGTAAGATAAAAGTGATATTGGTCGATGATCATGAAATGGTCCGCATGGGACTCAAGAGTTTTTTGAATTTACAAGC
TGATATTGATGTCGTTGGTGAAGCCTCTAATGGACGTGAAGGGGTTGATTTGGCATTGGCCTTGAAGCCAGATGTTTTGG
TTATGGATCTAGTGATGCCAGAGTTAGGCGGTGTTGAGGCAACTTTAGAAGTCCTAAAAAAATGGAAAGAGGCTAAGGTA
CTTGTGTTAACTTCCTATCTAGATAATGAAAAGATATACCCTGTCATTGATGCTGGTGCTAAAGGTTACATGTTAAAGAC
TTCTAGTGCAGCCGAAATTCTAAATGCTATTCGGAAAGTTTCAAAAGGTGAATTGGCCATTGAAACAGAGGTGGACAAAA
AAATTAAAGCGCATGACCAACACCCTGATTTGCATGAAGAGCTAACCGCGCGCGAGTATGATATTTTACATCTTTTAGCT
AAAGGGTATGATAATCAAACTATAGCGGATGAACTTTTCATCTCCTTGAAAACCGTTAAAACGCATGTATCTAATATTCT
TGCTAAGCTAGAAGTTGATGACCGAACTCAAGCGGTTGTCTATGCTTTTCGACACCATTTAGTCCCCCAAGACGATAATT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UW05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.913

96.714

0.512
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.385