Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   JMW66_RS26180 Genome accession   NZ_LR890619
Coordinates   5675526..5676149 (-) Length   207 a.a.
NCBI ID   WP_003103268.1    Uniprot ID   G3XD51
Organism   Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5670526..5681149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW66_RS26160 aroB 5671121..5672227 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  JMW66_RS26165 aroK 5672277..5672795 (-) 519 WP_003095833.1 shikimate kinase AroK -
  JMW66_RS26170 pilQ 5672807..5674951 (-) 2145 WP_014603377.1 type 4a pilus secretin PilQ Machinery gene
  JMW66_RS26175 comL/pilP 5675005..5675529 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  JMW66_RS26180 pilO 5675526..5676149 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  JMW66_RS26185 pilN 5676146..5676742 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  JMW66_RS26190 pilM 5676742..5677806 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  JMW66_RS26195 - 5677991..5680459 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22819.26 Da        Isoelectric Point: 4.7787

>NTDB_id=1014830 JMW66_RS26180 WP_003103268.1 5675526..5676149(-) (pilO) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
MSLASSLESLRKIDINDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLSDMQAQLEQQAAEEETLKQQFSTKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPVAPGSTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1014830 JMW66_RS26180 WP_003103268.1 5675526..5676149(-) (pilO) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGATATCAACGATCTCGACCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTGAGTGACA
TGCAGGCTCAGCTCGAACAGCAGGCCGCGGAAGAGGAGACGCTCAAGCAGCAGTTCTCCACCAAGGCCTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAAGAGTCCTTTGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGCCTGGGCAGCGGCCTGGAGTTCGAGGAAATCAAGCTGCTTC
CCGAGGTTGCCCAGCAGTTCTACATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTCACCCTGCATGACTTCGAGATCAAGCCGGTCGCGCCCGGCAGCACGTC
CAAGCTGCGCATGAGCATCCTGGCCAAGACCTATCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

46.114

93.237

0.43
  pilO Acinetobacter baumannii D1279779

43.979

92.271

0.406
  comO/pilO Acinetobacter baylyi ADP1

43.455

92.271

0.401

Multiple sequence alignment