Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABVF11_RS08250 | Genome accession | NZ_CP159610 |
| Coordinates | 1542811..1543323 (-) | Length | 170 a.a. |
| NCBI ID | WP_057797881.1 | Uniprot ID | A0A0R2NJT5 |
| Organism | Pediococcus argentinicus strain z30 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1537811..1548323
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVF11_RS08230 (ABVF11_08230) | dnaB | 1538529..1539914 (-) | 1386 | WP_353989673.1 | replicative DNA helicase | - |
| ABVF11_RS08235 (ABVF11_08235) | rplI | 1539945..1540397 (-) | 453 | WP_057797874.1 | 50S ribosomal protein L9 | - |
| ABVF11_RS08240 (ABVF11_08240) | - | 1540401..1542407 (-) | 2007 | WP_057797877.1 | DHH family phosphoesterase | - |
| ABVF11_RS08245 (ABVF11_08245) | rpsR | 1542550..1542789 (-) | 240 | WP_057797879.1 | 30S ribosomal protein S18 | - |
| ABVF11_RS08250 (ABVF11_08250) | ssb | 1542811..1543323 (-) | 513 | WP_057797881.1 | single-stranded DNA-binding protein | Machinery gene |
| ABVF11_RS08255 (ABVF11_08255) | rpsF | 1543372..1543662 (-) | 291 | WP_353989674.1 | 30S ribosomal protein S6 | - |
| ABVF11_RS08260 (ABVF11_08260) | gyrA | 1543852..1546368 (-) | 2517 | WP_353990446.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18727.27 Da Isoelectric Point: 4.5390
>NTDB_id=1014784 ABVF11_RS08250 WP_057797881.1 1542811..1543323(-) (ssb) [Pediococcus argentinicus strain z30]
MINRTVLVGRLTRDPELRYTGSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
NYENQQGQRVFVTEVVADNFSLLESRSESERRQSSESHNDSQGSMPSQPSSNPFDAGQSDSGAQQPNSNPNDPFANGGQS
IDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
NYENQQGQRVFVTEVVADNFSLLESRSESERRQSSESHNDSQGSMPSQPSSNPFDAGQSDSGAQQPNSNPNDPFANGGQS
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=1014784 ABVF11_RS08250 WP_057797881.1 1542811..1543323(-) (ssb) [Pediococcus argentinicus strain z30]
ATGATTAACCGAACAGTACTCGTAGGACGCCTAACAAGAGATCCTGAATTACGATATACAGGTAGTGGTGCTGCAGTTGT
ATCTTTTACAGTTGCTGTTAACCGCCAGTTTACGAACTCACAGGGAGAACGGGAAGCCGATTTCATTAACTGTGTAATGT
GGCGTAAAGCTGCAGAAAACTTCGCAAACTTTACTCGAAAGGGTTCCCTCGTTGGTATTGATGGTCGTATTCAGACCAGA
AATTACGAAAACCAACAGGGCCAAAGAGTGTTTGTAACGGAAGTCGTTGCTGATAACTTCTCATTACTTGAATCTCGTTC
AGAATCTGAACGTCGTCAAAGTAGTGAAAGTCACAATGATAGTCAAGGATCTATGCCTTCTCAACCATCATCAAATCCAT
TTGATGCGGGTCAATCAGATTCTGGTGCACAACAACCAAATAGTAATCCGAATGATCCATTCGCTAATGGCGGACAATCA
ATTGATATCTCTGATGATGATTTACCATTCTAA
ATGATTAACCGAACAGTACTCGTAGGACGCCTAACAAGAGATCCTGAATTACGATATACAGGTAGTGGTGCTGCAGTTGT
ATCTTTTACAGTTGCTGTTAACCGCCAGTTTACGAACTCACAGGGAGAACGGGAAGCCGATTTCATTAACTGTGTAATGT
GGCGTAAAGCTGCAGAAAACTTCGCAAACTTTACTCGAAAGGGTTCCCTCGTTGGTATTGATGGTCGTATTCAGACCAGA
AATTACGAAAACCAACAGGGCCAAAGAGTGTTTGTAACGGAAGTCGTTGCTGATAACTTCTCATTACTTGAATCTCGTTC
AGAATCTGAACGTCGTCAAAGTAGTGAAAGTCACAATGATAGTCAAGGATCTATGCCTTCTCAACCATCATCAAATCCAT
TTGATGCGGGTCAATCAGATTCTGGTGCACAACAACCAAATAGTAATCCGAATGATCCATTCGCTAATGGCGGACAATCA
ATTGATATCTCTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.052 |
100 |
0.682 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.302 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
62.353 |
0.365 |