Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N011_RS14300 Genome accession   NZ_CP159362
Coordinates   3121244..3122584 (-) Length   446 a.a.
NCBI ID   WP_024694109.1    Uniprot ID   A0AAU8LBZ9
Organism   Pseudomonas syringae CC1417     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116244..3127584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N011_RS14270 (N011_14270) - 3117723..3118124 (+) 402 WP_024688922.1 type IV pilin protein -
  N011_RS14275 (N011_14275) thiO 3118151..3119263 (+) 1113 WP_159372212.1 glycine oxidase ThiO -
  N011_RS14280 (N011_14280) - 3119494..3119709 (+) 216 Protein_2727 NAD(P)/FAD-dependent oxidoreductase -
  N011_RS14285 (N011_14285) - 3119940..3120155 (+) 216 Protein_2728 NAD(P)/FAD-dependent oxidoreductase -
  N011_RS14290 (N011_14290) - 3120383..3120601 (+) 219 Protein_2729 NAD(P)/FAD-dependent oxidoreductase -
  N011_RS14295 (N011_14295) - 3120829..3121047 (+) 219 Protein_2730 NAD(P)/FAD-dependent oxidoreductase -
  N011_RS14300 (N011_14300) pilR 3121244..3122584 (-) 1341 WP_024694109.1 sigma-54 dependent transcriptional regulator Regulator
  N011_RS14305 (N011_14305) pilS 3122593..3124179 (-) 1587 WP_032610294.1 ATP-binding protein Regulator
  N011_RS14310 (N011_14310) - 3124169..3124408 (-) 240 WP_080265980.1 PP0621 family protein -
  N011_RS14315 (N011_14315) - 3124529..3125551 (-) 1023 WP_024694108.1 outer membrane protein assembly factor BamD -
  N011_RS14320 (N011_14320) rluD 3125701..3126663 (+) 963 WP_024685589.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N011_RS14325 (N011_14325) pgeF 3126660..3127388 (+) 729 WP_024694107.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49945.19 Da        Isoelectric Point: 6.1359

>NTDB_id=1013427 N011_RS14300 WP_024694109.1 3121244..3122584(-) (pilR) [Pseudomonas syringae CC1417]
MTPRQKILIVDDEPDIRELLEITLGRMKLDTRSACNVAEARDYLAREPFELCLTDMRLPDGNGLELVQHIQQNFAHVPVA
MITAHGSLDTAIQALKAGAFDFLTKPVDLGRLRELVNSALRLTPIAQPVRALDNRLLGDSPPMRTLRNQITKLARSQAPV
YISGESGSGKELVARLIHEQGPRGEKPFVPVNCGAIPTDLMESEFFGHRKGSFTGAHEDKPGLFQAAQNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLSVEVAAGRFRQDLYYRLNVIELCVPSLRERREDIDQLAAI
VLQRLAANSGLPAARLNAQALETLKNYRFPGNVRELENMLERAYTLCENDEIHTSDLRLAESVRTTESDGPNLADIDNLE
DYLEGIERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1013427 N011_RS14300 WP_024694109.1 3121244..3122584(-) (pilR) [Pseudomonas syringae CC1417]
ATGACCCCACGGCAAAAGATCCTGATCGTTGACGATGAGCCGGACATTCGCGAACTTCTGGAGATTACTCTGGGCCGAAT
GAAACTCGACACCCGCAGCGCCTGCAATGTTGCCGAAGCACGTGATTACCTGGCTCGCGAACCGTTCGAACTGTGCCTGA
CGGACATGCGCCTGCCCGACGGCAATGGCCTGGAGCTGGTGCAGCATATCCAGCAGAATTTTGCGCACGTTCCCGTTGCG
ATGATCACGGCGCATGGCAGCCTGGACACCGCCATTCAGGCGCTCAAGGCCGGTGCGTTCGACTTCCTGACCAAGCCGGT
GGATCTGGGCAGGCTGCGCGAACTGGTCAACAGTGCGTTACGCCTCACGCCCATCGCCCAGCCGGTGCGCGCCCTGGATA
ACCGCCTGTTGGGTGACTCGCCGCCCATGCGTACGCTGCGCAACCAGATCACCAAGCTGGCGCGTAGCCAGGCCCCGGTC
TATATCAGCGGCGAGTCCGGCAGTGGCAAGGAGTTGGTGGCACGACTGATCCACGAACAGGGGCCGCGCGGCGAAAAACC
CTTTGTGCCGGTCAACTGTGGTGCCATTCCGACTGACCTGATGGAAAGCGAATTTTTCGGGCATCGCAAAGGCAGCTTCA
CGGGCGCTCACGAAGACAAGCCCGGACTGTTTCAAGCCGCCCAGAACGGCACGCTGTTTCTGGACGAGGTCGCTGACCTG
CCGCTGGCCATGCAGGTGAAACTGCTGCGCGCGATACAGGAAAAGTCCATTCGCAGCGTCGGCGGCCAGCAGGAACAGGT
GGTGGATGTACGGATCCTCTGTGCGACCCACAAGGACCTCAGCGTGGAAGTGGCGGCCGGGCGCTTCCGTCAGGATCTCT
ATTACCGCTTGAACGTCATTGAGCTGTGCGTGCCGTCCCTGCGTGAGCGTCGCGAAGACATTGACCAACTCGCCGCCATC
GTCCTGCAACGCCTGGCAGCCAATAGCGGCCTACCTGCGGCCCGGCTGAATGCCCAGGCGCTGGAAACCCTGAAGAACTA
CCGCTTTCCTGGCAACGTCCGAGAGCTGGAAAACATGTTGGAACGGGCCTACACGCTGTGCGAGAACGATGAAATCCATA
CGAGCGACCTGCGCCTGGCGGAGTCGGTCAGAACCACAGAAAGCGACGGCCCCAACCTGGCCGACATCGACAATCTGGAA
GATTATCTGGAAGGCATCGAACGCAAACTGATTCTGCAGGCCCTGGAAGAGACCCGCTGGAACCGGACAGCAGCAGCCCA
ACGACTCAGCCTGTCATTCAGGTCCATGCGCTATCGGTTAAAAAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.135

99.327

0.796
  pilR Acinetobacter baumannii strain A118

49.237

100

0.507

Multiple sequence alignment