Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N011_RS14305 Genome accession   NZ_CP159362
Coordinates   3122593..3124179 (-) Length   528 a.a.
NCBI ID   WP_032610294.1    Uniprot ID   A0AAU8LBB7
Organism   Pseudomonas syringae CC1417     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3117593..3129179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N011_RS14270 (N011_14270) - 3117723..3118124 (+) 402 WP_024688922.1 type IV pilin protein -
  N011_RS14275 (N011_14275) thiO 3118151..3119263 (+) 1113 WP_159372212.1 glycine oxidase ThiO -
  N011_RS14280 (N011_14280) - 3119494..3119709 (+) 216 Protein_2727 NAD(P)/FAD-dependent oxidoreductase -
  N011_RS14285 (N011_14285) - 3119940..3120155 (+) 216 Protein_2728 NAD(P)/FAD-dependent oxidoreductase -
  N011_RS14290 (N011_14290) - 3120383..3120601 (+) 219 Protein_2729 NAD(P)/FAD-dependent oxidoreductase -
  N011_RS14295 (N011_14295) - 3120829..3121047 (+) 219 Protein_2730 NAD(P)/FAD-dependent oxidoreductase -
  N011_RS14300 (N011_14300) pilR 3121244..3122584 (-) 1341 WP_024694109.1 sigma-54 dependent transcriptional regulator Regulator
  N011_RS14305 (N011_14305) pilS 3122593..3124179 (-) 1587 WP_032610294.1 ATP-binding protein Regulator
  N011_RS14310 (N011_14310) - 3124169..3124408 (-) 240 WP_080265980.1 PP0621 family protein -
  N011_RS14315 (N011_14315) - 3124529..3125551 (-) 1023 WP_024694108.1 outer membrane protein assembly factor BamD -
  N011_RS14320 (N011_14320) rluD 3125701..3126663 (+) 963 WP_024685589.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N011_RS14325 (N011_14325) pgeF 3126660..3127388 (+) 729 WP_024694107.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 58097.97 Da        Isoelectric Point: 6.5564

>NTDB_id=1013428 N011_RS14305 WP_032610294.1 3122593..3124179(-) (pilS) [Pseudomonas syringae CC1417]
MSAETLSLGSAQAHRILQLYHLYRLVIGILLVSLISARLDAELLQLADTDLFRAGCWLYLVSNILIVVLLEQPKRQAHLF
SLAMADALMLSGLFYAAGGPSSGIGNLLIASVAISNILLRGRSGLLIAAVSAIAIIYLTFYISFSTPAVANDYVQAGSLG
TLCFAAAMLVQALTARMQVSEVLAKQRAADVDNLEELNALILQRMRTGILVLDARRQVLLANQGALNLLGHEQLVGQVID
SYSPELVDRFRHWLINPIMVPRSISTSAIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELTAPDRRLGQIIHDQSRRINVVIENVLQLSRRREAHPELLDLRQWLDTFVTDFRTSAAPD
QQLHIDIGSGMLTTRMDPEQLTQVVTNLLQNGLRYSGQQHPIAQVWLRLYHDLQSNLPTLEVLDDGAGVSENHLTRLFEP
FFTTESKGTGLGLYLSRELCESNQAHLDYAPREGGGSCLRITFAHPFK

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=1013428 N011_RS14305 WP_032610294.1 3122593..3124179(-) (pilS) [Pseudomonas syringae CC1417]
GTGAGCGCTGAGACGCTCTCACTGGGCAGCGCCCAAGCGCATCGTATCCTGCAGCTCTATCACCTTTATCGCCTTGTCAT
TGGGATCCTGCTGGTATCGCTGATCTCTGCCCGCCTGGACGCCGAACTGCTGCAACTGGCCGATACCGACCTGTTCCGGG
CAGGTTGCTGGCTGTATCTGGTATCAAACATTCTCATCGTGGTGCTGCTCGAACAGCCCAAACGTCAGGCTCACCTGTTC
AGCCTGGCGATGGCGGATGCGCTCATGTTGTCGGGGCTGTTCTATGCGGCAGGCGGCCCGTCGAGCGGTATCGGCAACCT
GCTGATCGCGTCAGTGGCCATCAGCAACATCCTGTTGCGTGGCCGCAGCGGCCTGCTGATTGCCGCGGTCTCGGCCATCG
CCATCATTTACCTGACCTTCTACATCAGCTTCAGCACCCCTGCGGTCGCCAACGACTACGTGCAGGCGGGCTCGCTGGGC
ACGTTGTGCTTTGCTGCGGCCATGCTGGTGCAGGCACTCACGGCGCGCATGCAGGTCAGCGAGGTACTGGCCAAACAGCG
CGCTGCCGATGTCGATAATCTTGAAGAGCTCAATGCCCTGATTCTGCAGCGCATGCGCACCGGCATTCTGGTGCTGGACG
CGCGACGCCAGGTGCTGCTGGCCAACCAGGGCGCACTGAACCTGTTGGGTCATGAGCAATTGGTCGGCCAGGTGATCGAC
AGCTATTCACCTGAGCTGGTGGACCGTTTTCGTCATTGGCTGATCAATCCGATCATGGTGCCGCGCAGCATCTCGACCTC
GGCGATCGGCCCTGTGCTGCAACCCAGCTTCGCCGCACTGAACCGAGGTGATCAGCGCCAGACCCTGATTTTTCTGGAGG
ACCTGTCACAGATTGCCCAGCAGGCTCAGCAACTCAAGCTGGCCGCACTGGGTCGCCTGACTGCCGGGATCGCCCATGAA
ATCCGCAATCCCCTGGGCGCGGTCAGCCACGCAGCGCAGTTGTTGAACGAATCGGAAGAACTGACTGCGCCGGATCGGCG
ACTGGGACAGATCATCCATGACCAGTCACGGCGCATCAATGTGGTGATCGAGAACGTACTGCAACTGTCACGACGACGCG
AAGCCCACCCCGAACTGCTCGACCTGAGGCAGTGGCTCGACACGTTCGTTACAGACTTTCGCACCTCTGCCGCACCCGAT
CAGCAGCTTCACATCGATATCGGCAGCGGCATGCTGACCACCCGCATGGACCCGGAACAGTTGACTCAGGTCGTGACCAA
CCTGCTGCAGAACGGGCTGCGCTACAGCGGTCAGCAGCACCCCATCGCCCAGGTATGGCTCAGGCTGTATCACGACCTGC
AGAGCAACTTGCCGACACTTGAAGTTCTGGACGATGGTGCGGGCGTCAGTGAGAACCACCTGACCCGCCTGTTCGAACCC
TTCTTCACCACCGAAAGCAAAGGGACAGGTCTGGGCCTCTACCTGTCACGCGAGCTATGCGAAAGCAATCAGGCGCACCT
GGACTACGCCCCTCGGGAAGGCGGCGGCAGTTGTCTGCGCATTACCTTCGCCCACCCGTTCAAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.795

100

0.608

Multiple sequence alignment