Detailed information NTG1013070

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: ABQ274_RS10545
• Genome accession: NZ_CP159281
• Coordinates: 2105855..2106253 (+)
• Length: 132 a.a.
• NCBI ID: WP_023164614.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain FNZ339
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2100855..2111253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQ274_RS10510 (ABQ274_10510)	-	2100984..2102999 (+)	2016	WP_353727687.1	hypothetical protein	-
ABQ274_RS10515 (ABQ274_10515)	-	2103013..2103243 (+)	231	WP_129300312.1	hypothetical protein	-
ABQ274_RS10520 (ABQ274_10520)	-	2103256..2103606 (+)	351	WP_023164508.1	hypothetical protein	-
ABQ274_RS10525 (ABQ274_10525)	-	2103619..2103906 (+)	288	WP_023164507.1	phage holin	-
ABQ274_RS10530 (ABQ274_10530)	-	2103906..2104685 (+)	780	WP_353726892.1	peptidoglycan amidohydrolase family protein	-
ABQ274_RS10535 (ABQ274_10535)	-	2104765..2105487 (+)	723	WP_353726893.1	hypothetical protein	-
ABQ274_RS10540 (ABQ274_10540)	comGC	2105593..2105862 (+)	270	WP_023349160.1	competence type IV pilus major pilin ComGC	Machinery gene
ABQ274_RS10545 (ABQ274_10545)	comGD	2105855..2106253 (+)	399	WP_023164614.1	competence type IV pilus minor pilin ComGD	Machinery gene
ABQ274_RS10550 (ABQ274_10550)	comGE	2106225..2106521 (+)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
ABQ274_RS10555 (ABQ274_10555)	comGF	2106484..2106930 (+)	447	WP_031558968.1	competence type IV pilus minor pilin ComGF	Machinery gene
ABQ274_RS10560 (ABQ274_10560)	comGG	2106969..2107253 (+)	285	WP_010906314.1	competence type IV pilus minor pilin ComGG	Machinery gene
ABQ274_RS10565 (ABQ274_10565)	-	2107334..2107771 (+)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
ABQ274_RS10570 (ABQ274_10570)	-	2107768..2108610 (+)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
ABQ274_RS10575 (ABQ274_10575)	-	2108787..2109524 (+)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
ABQ274_RS10580 (ABQ274_10580)	-	2109517..2110326 (+)	810	WP_010906310.1	metal ABC transporter permease	-
ABQ274_RS10585 (ABQ274_10585)	-	2110365..2111231 (-)	867	WP_353726894.1	RluA family pseudouridine synthase	-

Sequence

Protein

• Length: 132 a.a.
• Molecular weight: 15161.74 Da
• Isoelectric Point: 7.9839

>NTDB_id=1013070 ABQ274_RS10545 WP_023164614.1 2105855..2106253(+) (comGD) [Lactococcus lactis strain FNZ339]
MTKAFTLLESLLVLLITSFITTLFSLEIIQTIHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQELICEDRSITI
PKEVAVKDFTVKFDDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide

• Length: 399 bp

>NTDB_id=1013070 ABQ274_RS10545 WP_023164614.1 2105855..2106253(+) (comGD) [Lactococcus lactis strain FNZ339]
ATGACTAAAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTACTTCTTTTATCACAACTCTTTTTTCTTTAGA
AATAATACAAACAATCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCTATAAAAGGAGTCAAGAAG
ATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAAGATAGAAGTATCACAATT
CCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAGCTTACAAAAACTCACAAT
TTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Lactococcus lactis subsp. cremoris KW2	67.424	100	0.674
comYD	Streptococcus mutans UA140	41.406	96.97	0.402
comYD	Streptococcus mutans UA159	41.406	96.97	0.402
comYD	Streptococcus gordonii str. Challis substr. CH1	40.625	96.97	0.394