Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N027_RS07935 Genome accession   NZ_CP159278
Coordinates   1715862..1718078 (+) Length   738 a.a.
NCBI ID   WP_024656398.1    Uniprot ID   A0AAU8MDU7
Organism   Pseudomonas syringae USA007     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1710862..1723078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N027_RS07925 (N027_07925) - 1712749..1713600 (-) 852 WP_024656396.1 DUF4123 domain-containing protein -
  N027_RS07930 (N027_07930) tssI 1713597..1715624 (-) 2028 WP_024656397.1 type VI secretion system tip protein VgrG -
  N027_RS07935 (N027_07935) comA 1715862..1718078 (+) 2217 WP_024656398.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N027_RS07940 (N027_07940) exbB 1718122..1718838 (+) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N027_RS07945 (N027_07945) - 1718835..1719266 (+) 432 WP_024656399.1 biopolymer transporter ExbD -
  N027_RS07950 (N027_07950) lpxK 1719266..1720261 (+) 996 WP_024656400.1 tetraacyldisaccharide 4'-kinase -
  N027_RS07955 (N027_07955) - 1720279..1720464 (+) 186 WP_003381112.1 Trm112 family protein -
  N027_RS07960 (N027_07960) kdsB 1720461..1721225 (+) 765 WP_024656401.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N027_RS07965 (N027_07965) murB 1721260..1722279 (+) 1020 WP_019333191.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80686.00 Da        Isoelectric Point: 10.3658

>NTDB_id=1013014 N027_RS07935 WP_024656398.1 1715862..1718078(+) (comA) [Pseudomonas syringae USA007]
MRTGMIALALGLVVLRFLPALPPTWLVLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLQLRLDGQTLWLQG
KVVGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLISFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGSWSWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPFPVVGEGLLWLAGGALEWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELSRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPDGNAGSCMLSVDAGGERLLLTGDIDVHAE
RAAMDSGFDLRAHWLQAPHHGSRSSSSKVFLQAVAPVGMLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1013014 N027_RS07935 WP_024656398.1 1715862..1718078(+) (comA) [Pseudomonas syringae USA007]
ATGCGCACAGGGATGATCGCGCTCGCGTTGGGGCTTGTGGTCCTACGCTTTCTGCCCGCTTTGCCGCCGACCTGGCTCGT
GTTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTTCTGCTCGGCTTCACGT
GGGCGTGTGTTTCGGCGCAGTGGGCATTGAATGACCGTTTGCAGCTACGGCTGGACGGTCAGACGCTGTGGCTGCAAGGC
AAAGTGGTCGGTTTGCCGAGCGTTGCCGAGGGCGTGGTGCGTTTCGAGCTGGAGCACGCCACGTCGCGGCGGGCGAAGTT
GCCTGCGCTGATTCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGCTGGCGTCTGGCGGTCAAGCTCA
AGCGCCCCGGCGGGCTGGTCAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGCTTGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGCGGTCGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTTGCTGGCGTGATTTACGCGCTG
GTCGCAGGTCTCGCCCGCTGGGGACTGTGGCCACGGGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCGTTCATCGC
TGCGCTGGGCTATGGATTGCTGGCTGGTTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTCTTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTTTTGATTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTTGGCATTCTGGTACTGATTTTCAGTGGCCGTCTGGGTAG
CTGGAGCTGGTGGCAGAGCTGGACGCGCGCGCAGTGGCTGATCGCTATCGGCCTGCTGCCGATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTCGCCAACCTGCTCGCGGTGCCTTGGGTCAGTGTGATCGTCTTGCCGCCAGCGTTG
ATCGGGACGTTATTGCTGCCGTTTCCTGTTGTCGGTGAAGGCCTGCTCTGGCTTGCGGGAGGCGCGCTGGAATGGCTGTT
CGTGTTTCTCGGTTGGGTGGCCGAGGCCTTGCCAGCCTGGCTGCCCAGTGCGGTGCCTGGCTGGGCGTGGCTGTTGAGTC
TGCTCGGGGCCTTTGTTTTATTGCTCCCCAAAGGTGTGCCGCTGCGCCTGTTGGGCTGGCCATTATTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCTGTGCCGATGGGGCAGGTCGAGGTGTTGCAACTGGATGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACGCTGCTCTACGATGCAGGGCCGCGTTTCGGTGAGTTCGATATCGGCCAAAGGGTGGTCGTGC
CCGCGATGCGCAAGTCCGGTGTTCGCCATCTGGACCTGATGCTGATCAGCCATGCCGACGCGGATCATGCCGGCGGGGCG
GCTGCGGTTCATCGGGCATTTCCGGTGAACCGAGTGTTGGGCGGGGAACTGAGCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGGTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCGACGGCA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCAGGCGGCGAGCGTCTGCTGCTGACGGGCGACATTGATGTGCACGCCGAG
CGTGCGGCAATGGACAGCGGTTTTGACCTTCGTGCCCACTGGTTGCAGGCTCCGCACCACGGCAGCCGCAGTTCATCCTC
CAAAGTGTTTCTGCAGGCGGTTGCGCCGGTGGGCATGCTGATTTCCCGTGGGCAGAACAATGCTTTCGGTCATCCGCATC
CATTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTCGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCAGAACGGGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.547

97.019

0.617
  comA Ralstonia pseudosolanacearum GMI1000

32.5

100

0.37

Multiple sequence alignment