Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N027_RS07940 Genome accession   NZ_CP159278
Coordinates   1718122..1718838 (+) Length   238 a.a.
NCBI ID   WP_007245835.1    Uniprot ID   A0A2G7MEY6
Organism   Pseudomonas syringae USA007     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1713122..1723838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N027_RS07930 (N027_07930) tssI 1713597..1715624 (-) 2028 WP_024656397.1 type VI secretion system tip protein VgrG -
  N027_RS07935 (N027_07935) comA 1715862..1718078 (+) 2217 WP_024656398.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N027_RS07940 (N027_07940) exbB 1718122..1718838 (+) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N027_RS07945 (N027_07945) - 1718835..1719266 (+) 432 WP_024656399.1 biopolymer transporter ExbD -
  N027_RS07950 (N027_07950) lpxK 1719266..1720261 (+) 996 WP_024656400.1 tetraacyldisaccharide 4'-kinase -
  N027_RS07955 (N027_07955) - 1720279..1720464 (+) 186 WP_003381112.1 Trm112 family protein -
  N027_RS07960 (N027_07960) kdsB 1720461..1721225 (+) 765 WP_024656401.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N027_RS07965 (N027_07965) murB 1721260..1722279 (+) 1020 WP_019333191.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25863.42 Da        Isoelectric Point: 7.9105

>NTDB_id=1013015 N027_RS07940 WP_007245835.1 1718122..1718838(+) (exbB) [Pseudomonas syringae USA007]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLANSKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1013015 N027_RS07940 WP_007245835.1 1718122..1718838(+) (exbB) [Pseudomonas syringae USA007]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCC
GATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGC
CGCACCTGCTGGGTCAGGCATGGCAGTGGATTCAGGAAAAGAAACTCGATAACGAAAAGCTAAAGCAACTGCGCGCCGAC
TCGCCACTGGGTGAAATCCTTGCCGCTGGCCTGGCCAATTCCAAGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCCGCCCGTGTCATCCATGACCTGGAGCGCTACCTGAGCGCGCTGGGCTCTATCGCCGCGATGGCCCCGTTGCTCG
GTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCGGTTCGTTCAACAGCACCGGAGCAACGGCCAATGCCGGTGTG
CTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACCGCGTCTGGCCTTATCGTGGCAATCCCGGCGATCTTCTTTCACCG
CTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTGGGCATGGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCAAATCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7MEY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693

Multiple sequence alignment