Detailed information NTG1013003

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: N027_RS03725
• Genome accession: NZ_CP159278
• Coordinates: 770255..771595 (-)
• Length: 446 a.a.
• NCBI ID: WP_024656192.1
• Uniprot ID: A0AAU8MCH3
• Organism: Pseudomonas syringae USA007
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 765255..776595

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N027_RS03715 (N027_03715)	-	767861..768976 (-)	1116	WP_024657516.1	efflux RND transporter periplasmic adaptor subunit	-
N027_RS03720 (N027_03720)	-	769058..769675 (-)	618	WP_024657517.1	TetR/AcrR family transcriptional regulator	-
N027_RS03725 (N027_03725)	pilR	770255..771595 (-)	1341	WP_024656192.1	sigma-54 dependent transcriptional regulator	Regulator
N027_RS03730 (N027_03730)	pilS	771598..773193 (-)	1596	WP_024656193.1	PAS domain-containing sensor histidine kinase	Regulator
N027_RS03735 (N027_03735)	-	773183..773422 (-)	240	WP_057403016.1	PP0621 family protein	-
N027_RS03740 (N027_03740)	-	773552..774574 (-)	1023	WP_024656194.1	outer membrane protein assembly factor BamD	-
N027_RS03745 (N027_03745)	rluD	774724..775686 (+)	963	WP_003381266.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
N027_RS03750 (N027_03750)	pgeF	775683..776411 (+)	729	WP_024656195.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50041.09 Da
• Isoelectric Point: 6.8262

>NTDB_id=1013003 N027_RS03725 WP_024656192.1 770255..771595(-) (pilR) [Pseudomonas syringae USA007]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSSTQPVRSIDSRLLGDSPPMRTLRNQISKLARSQAPI
YISGESGSGKELVARLIHEQGPRINKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQIAAS
VLRRLAGNSTQPVARLHAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=1013003 N027_RS03725 WP_024656192.1 770255..771595(-) (pilR) [Pseudomonas syringae USA007]
ATGAGCCCACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTTCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACCCGCAGCGCTCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCCCATGTGCCGGTAGCG
ATGATCACCGCCCACGGCAATCTGGACACGGCGATTCATGCGTTGAAAGCCGGAGCCTTCGATTTCGTGACCAAACCGGT
GGACCTCAACCGGCTCCGCGAACTGGTCAATAGCGCGCTGAGTCTGCCCTCCTCCACCCAACCGGTGCGCAGCATCGACA
GCCGTCTGCTGGGTGATTCGCCGCCGATGCGCACCCTGCGTAACCAGATCAGCAAGCTGGCGCGCAGCCAGGCGCCCATT
TACATCAGCGGCGAGTCGGGCAGCGGCAAAGAGCTGGTAGCCCGGCTGATCCACGAGCAAGGGCCGCGCATCAACAAACC
CTTCGTGCCGGTCAACTGCGGGGCGATTCCCTCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCAGGGTTGTTTCAGGCGGCGCATAACGGCACGCTGTTCCTTGATGAGGTCGCTGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAAAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTGGACGTGCGTATTCTGTGCGCCACCCACAAGGACCTGAATGTCGAAGTCGCTGCGGGCCGTTTCCGTCAGGACCTGT
ATTACCGGCTTAACGTGATTGAACTGCGCGTGCCTTCATTGCGCGAGCGGCGTGAAGACATCGATCAGATTGCAGCCAGC
GTTTTACGGCGACTTGCAGGCAACAGCACTCAGCCCGTTGCGCGCTTGCATGCGCAGGCTCTGGAAACACTGAAAAGTTA
TCGATTCCCTGGGAACGTGCGCGAACTGGAAAACATGCTCGAGCGCGCTTACACCCTCTGTGAAAACGATGAAATCCACG
CCAGCGACCTGCGCCTCGCCGAGTCCGCCAGCCCTCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCTGCGGCCGA
ACGGCTCAGTTTGTCATTCAGGTCGTTGCGCTACCGGTTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.878	99.327	0.774
pilR	Acinetobacter baumannii strain A118	48.478	100	0.5