Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N027_RS03730 Genome accession   NZ_CP159278
Coordinates   771598..773193 (-) Length   531 a.a.
NCBI ID   WP_024656193.1    Uniprot ID   A0AAU8MBP3
Organism   Pseudomonas syringae USA007     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 766598..778193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N027_RS03715 (N027_03715) - 767861..768976 (-) 1116 WP_024657516.1 efflux RND transporter periplasmic adaptor subunit -
  N027_RS03720 (N027_03720) - 769058..769675 (-) 618 WP_024657517.1 TetR/AcrR family transcriptional regulator -
  N027_RS03725 (N027_03725) pilR 770255..771595 (-) 1341 WP_024656192.1 sigma-54 dependent transcriptional regulator Regulator
  N027_RS03730 (N027_03730) pilS 771598..773193 (-) 1596 WP_024656193.1 PAS domain-containing sensor histidine kinase Regulator
  N027_RS03735 (N027_03735) - 773183..773422 (-) 240 WP_057403016.1 PP0621 family protein -
  N027_RS03740 (N027_03740) - 773552..774574 (-) 1023 WP_024656194.1 outer membrane protein assembly factor BamD -
  N027_RS03745 (N027_03745) rluD 774724..775686 (+) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N027_RS03750 (N027_03750) pgeF 775683..776411 (+) 729 WP_024656195.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58326.18 Da        Isoelectric Point: 6.8229

>NTDB_id=1013004 N027_RS03730 WP_024656193.1 771598..773193(-) (pilS) [Pseudomonas syringae USA007]
MTADTPSLTSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
GLAMTDAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARLQVSEGLAEQRAADVDSLEELNALILQRMRTGILVLDARRQVVLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLINPIMVPRSITTSSIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEDLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPELLDLKVWLENFVSDFRSSAATD
QSIHVQISPGMLTTRMDAGQLTQIITNLVQNGLRYSSRNHPSAQVWLKLQHDRESDLPILEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYLPRPHDGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=1013004 N027_RS03730 WP_024656193.1 771598..773193(-) (pilS) [Pseudomonas syringae USA007]
GTGACCGCTGATACGCCCTCGCTTACCAGCCCGCAGGCACAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
TGGCGTCGTGCTGGTTCTGTTGATCTCCAGCAGTCTGGAAACCGAGTTGCTGCAACTGGCCAATCCGAATCTGTTCCGTT
CAGGCTGCTGGCTGTATCTGGTGTTCAACATTCTGGTGGTGGTGCTGCTGGAACGCCCCAGCCGCCAGGCGCAGCTGTTT
GGCTTGGCGATGACTGACGCAATCATGCTTTCCGGGCTGTTTTATGCGGCCGGCGGGCCGTCGAGCGGCATCGGCAACCT
GTTGATCGCGTCCGTGGCGATCAGCAACGTGCTGCTGCGAGGCCGTATTGGCCTGTTGATCGCCGCCGTTTCTGCCATTG
GCATTATCTACCTGACGTTCTATATCAGCTTCGGCACACCTTCGGTGTCCAACGACTACGTGCAGGCCGGCTCTCTGGGT
GCACTGTGCTTCGCCGCCGCGCTGCTGGTGCAGGCACTGACTGCGCGCCTGCAAGTCAGCGAGGGGCTGGCCGAGCAACG
GGCAGCGGATGTCGACAGCCTTGAAGAGCTCAACGCTCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTGGATG
CGCGCCGCCAGGTGGTGCTGGCCAATCAGGGGGCCTTGACGCTGCTGGGCCACGAACGACTGGTCGGCCAGGTCATCGAC
GCTTACTCGCCGCAGTTGGTCGAGCGCCTGCGCCAGTGGCTGATCAACCCGATCATGGTGCCGCGCAGCATCACCACTTC
ATCTATCGGGCCTGTGCTGCAACCCAGCTTTGCCGCGCTCAATCGGGGCGACCAGCGCCAGACGCTGATCTTTCTCGAAG
ACCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCGCTGGGCCGCCTGACTGCAGGCATCGCCCACGAA
ATACGTAATCCGCTGGGCGCGGTCAGCCACGCTGCACAGTTACTCAACGAGTCGGAAGACCTCAGCGCGCCGGATCGCCG
TCTGGGGCAGATCATTCATGATCAGTCGCAGCGCATTGATCGGGTGATTGAAAACGTCCTGCAACTGTCTCGCCGACGCG
AAGCACAACCCGAACTGCTCGACCTGAAAGTCTGGCTGGAAAATTTTGTCAGCGACTTTCGCAGCTCGGCGGCTACGGAT
CAGTCGATTCATGTGCAAATCAGCCCCGGTATGCTGACCACTCGCATGGACGCCGGTCAACTGACCCAGATCATCACCAA
CCTGGTGCAGAACGGCTTACGTTACAGCAGTCGTAATCACCCGTCGGCGCAGGTCTGGCTGAAGCTGCAGCATGACCGGG
AAAGCGATTTACCCATTCTGGAAGTCCTGGACGACGGGCCGGGTGTCAGCGAACAGCACCTGAGCAAGATTTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACTGGCCTGGGTCTATACCTTTCCCGTGAATTGTGCGAAAGCAATCAGGCGCATCT
GGAATACCTCCCCCGACCACACGACGGTGGCAGCTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.842

100

0.62

Multiple sequence alignment