Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ABVN18_RS12420 Genome accession   NZ_CP159257
Coordinates   2633385..2635610 (+) Length   741 a.a.
NCBI ID   WP_353632427.1    Uniprot ID   -
Organism   Pseudomonas canadensis strain MYb395     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2628385..2640610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN18_RS12405 (ABVN18_12405) - 2630664..2631392 (+) 729 WP_353632425.1 response regulator transcription factor -
  ABVN18_RS12410 (ABVN18_12410) - 2631379..2632737 (+) 1359 WP_353632426.1 sensor histidine kinase -
  ABVN18_RS12415 (ABVN18_12415) - 2632734..2633249 (-) 516 WP_012724913.1 DUF2062 domain-containing protein -
  ABVN18_RS12420 (ABVN18_12420) comA 2633385..2635610 (+) 2226 WP_353632427.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABVN18_RS12425 (ABVN18_12425) exbB 2635684..2636319 (+) 636 WP_016978182.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABVN18_RS12430 (ABVN18_12430) - 2636316..2636744 (+) 429 WP_010209650.1 biopolymer transporter ExbD -
  ABVN18_RS12435 (ABVN18_12435) lpxK 2636744..2637754 (+) 1011 WP_236318094.1 tetraacyldisaccharide 4'-kinase -
  ABVN18_RS12440 (ABVN18_12440) - 2637779..2637964 (+) 186 WP_003174668.1 Trm112 family protein -
  ABVN18_RS12445 (ABVN18_12445) kdsB 2637961..2638725 (+) 765 WP_028616766.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABVN18_RS12450 (ABVN18_12450) - 2638725..2639189 (+) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  ABVN18_RS12455 (ABVN18_12455) murB 2639186..2640205 (+) 1020 WP_068936826.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80487.45 Da        Isoelectric Point: 10.5545

>NTDB_id=1012914 ABVN18_RS12420 WP_353632427.1 2633385..2635610(+) (comA) [Pseudomonas canadensis strain MYb395]
MRTGMCAFALGLLALRFLPALPTTGWLIALLVLALMLLPFRTYPLAFFLFGLSWACMSAQWALDDRLKPVLDGQTRWVEG
RVSGLPQQTHEGVRFVLTDSRSRNARLPTHIRVSWRGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPAANAWRDSVRQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRLRLRHLGLWWPLLLALNGVLILEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQVWTRPQWLIAIGLFPALLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLALPFVGEGLLWLAGGALGALFNGLAWLAGQMPAWIPADVPLGYWLVSLLGAVLLLLPKGVPFRVLGWPMFLLAV
FPPRALVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVGELDMLLLSHADADHAGGA
AAIANGMPIKRVVGGETEGLPPSLATQPCTSGERWIWDGVTFELWQWPDAISGNAKSCVLQVQANGERLLLTGDIGRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRNNAFGHPHPQVMERYQRLGSQVYDSAEQGAVRLQL
GAFTPPIVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1012914 ABVN18_RS12420 WP_353632427.1 2633385..2635610(+) (comA) [Pseudomonas canadensis strain MYb395]
ATGAGGACAGGGATGTGCGCGTTTGCGCTGGGGCTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGACGACCGGTTGGCT
GATCGCCTTGCTGGTGCTGGCCCTGATGCTGTTGCCGTTTCGCACGTATCCCTTGGCTTTTTTCCTGTTTGGGCTGAGTT
GGGCGTGCATGAGCGCGCAGTGGGCGCTGGATGATCGCCTCAAGCCAGTACTGGACGGTCAGACGCGCTGGGTGGAAGGG
CGGGTCAGCGGGCTTCCGCAACAGACGCACGAGGGCGTGCGCTTTGTACTGACCGACAGTCGGTCGCGTAATGCCCGGTT
GCCCACGCACATCCGGGTGTCCTGGCGTGGCGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCCGTCACCCTCA
AGCGGCCCGCCGGGTTGCTGAACTTTCACGGCTTTGATCAGGAGGCTTGGCTGCTGGCCCAGCGCATTGGCGCCACCGGT
ACGGTAAAGGATGGAGAGCGCCTGGCACCGGCTGCCAACGCCTGGCGCGACAGTGTGCGTCAGCGTTTGCTTGCGGTGGA
CGCCCAAGGCCGGGAGGCAGGCCTGATTGCCCTGGTTTTGGGCGATGGCTCTGGATTGGCGGCTGCTGATTGGCAGGTGC
TGCAGGACACAGGGACTGTGCATTTGCTGGTCATCTCCGGCCAGCATATCGGGCTGCTGGCGGGGTTGATTTACGGTTTG
ATCGCTGGCTTGGCGCGCTATGGATGCTGGCCTCGAACCTGGCCATGGCTGCCCTGGGCTTGTGGGCTGGCGTTCACTAC
GGCACTGGGTTACGGCTTGCTGGCTGGATTTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTTGGGCTGGTGTTGTTGT
GGCGATTGCGCTTGCGTCACCTGGGGCTGTGGTGGCCTTTGTTGCTGGCGCTCAATGGGGTGCTGATCCTGGAGCCGTTG
GCCAGCTTGCAGCCGGGGTTCTGGCTGTCCTTTGCGGCGGTTGCGGTGCTGATCCTGGCGTTTGGTGGCCGGCTGGGACC
CTGGAGCCTGTGGCAGGTGTGGACTCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGCCTTGCTGGTGTTGGGGC
TGCCCATTAGCCTGAGTGCGCCGTTTGCCAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTGTTGCCGCTGGCCTTG
TTGGGCACTGCATTGCTGGCGTTGCCGTTTGTAGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCACTGGGTGCCTTGTT
CAACGGCTTGGCGTGGCTCGCCGGACAGATGCCGGCCTGGATTCCGGCCGATGTACCGCTGGGGTATTGGTTGGTAAGTC
TGCTGGGCGCAGTGCTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGTTGGCCGATGTTTCTGCTGGCGGTG
TTTCCCCCACGAGCGCTGGTGCCCGACGGACAGGTGGAGGTGACGCAGCTTGATGTCGGCCAGGGGCAATCGTTGATTTT
GCGCACCCGTCATCACACGTTGCTCTACGACGCCGGCCCGCGTTCCGGCACGTTCGACTTGGGTGCGCGCGTGGTACTGC
CGTCTTTGCGAAAGCTCGGGGTAGGAGAGCTGGATATGCTGCTGCTCAGCCACGCCGATGCCGATCACGCCGGGGGTGCA
GCGGCGATTGCCAATGGCATGCCGATCAAGCGTGTGGTGGGCGGAGAAACTGAAGGTCTGCCCCCATCGCTCGCCACCCA
GCCTTGCACCAGCGGCGAGCGCTGGATCTGGGACGGTGTGACCTTCGAACTCTGGCAGTGGCCGGACGCCATAAGTGGCA
ACGCGAAGTCCTGCGTCTTGCAGGTGCAGGCCAATGGCGAGCGCCTGCTGCTGACCGGTGATATTGGCCGTGCGGCGGAA
CAGGCCATGCTTGCGTCACCGCTGGCGGTGCCCACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAACGGCTTGCTCCGCGATCCGTGCTGATCTCGCGAGGGCGCAACAATGCGTTCGGCCATCCCCATC
CACAGGTGATGGAACGCTACCAGCGGTTGGGCAGCCAGGTATATGACAGCGCCGAGCAGGGCGCTGTACGTCTGCAGTTG
GGTGCTTTTACGCCCCCGATAGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.278

97.166

0.586
  comA Ralstonia pseudosolanacearum GMI1000

34.293

100

0.37

Multiple sequence alignment