Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABVN18_RS12425 Genome accession   NZ_CP159257
Coordinates   2635684..2636319 (+) Length   211 a.a.
NCBI ID   WP_016978182.1    Uniprot ID   A0A223VS35
Organism   Pseudomonas canadensis strain MYb395     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2630684..2641319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN18_RS12410 (ABVN18_12410) - 2631379..2632737 (+) 1359 WP_353632426.1 sensor histidine kinase -
  ABVN18_RS12415 (ABVN18_12415) - 2632734..2633249 (-) 516 WP_012724913.1 DUF2062 domain-containing protein -
  ABVN18_RS12420 (ABVN18_12420) comA 2633385..2635610 (+) 2226 WP_353632427.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABVN18_RS12425 (ABVN18_12425) exbB 2635684..2636319 (+) 636 WP_016978182.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABVN18_RS12430 (ABVN18_12430) - 2636316..2636744 (+) 429 WP_010209650.1 biopolymer transporter ExbD -
  ABVN18_RS12435 (ABVN18_12435) lpxK 2636744..2637754 (+) 1011 WP_236318094.1 tetraacyldisaccharide 4'-kinase -
  ABVN18_RS12440 (ABVN18_12440) - 2637779..2637964 (+) 186 WP_003174668.1 Trm112 family protein -
  ABVN18_RS12445 (ABVN18_12445) kdsB 2637961..2638725 (+) 765 WP_028616766.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABVN18_RS12450 (ABVN18_12450) - 2638725..2639189 (+) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  ABVN18_RS12455 (ABVN18_12455) murB 2639186..2640205 (+) 1020 WP_068936826.1 UDP-N-acetylmuramate dehydrogenase -
  ABVN18_RS12460 (ABVN18_12460) - 2640268..2640939 (-) 672 WP_016977342.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.05 Da        Isoelectric Point: 7.3615

>NTDB_id=1012915 ABVN18_RS12425 WP_016978182.1 2635684..2636319(+) (exbB) [Pseudomonas canadensis strain MYb395]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1012915 ABVN18_RS12425 WP_016978182.1 2635684..2636319(+) (exbB) [Pseudomonas canadensis strain MYb395]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTTCGCGCCAGCCGCGTGACCCCCGAGCATTTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AACAGCTCGATAAGGAAAAACTCAAGGAGCTGCGCGCCAATTCCCCGTTGGGTGAGATCCTCGCTGCCGGGCTGGCCAAT
TCCAAGCACGGTCGCGAGATTATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGCGTCATCCATGAACTGGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCTTGCTCGGTACGGTGTTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTACTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCC
GCAGGCCTGATGGTGGGTATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGTATCGATGAACTTGTGGTGGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223VS35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment