Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABU995_RS11400 Genome accession   NZ_CP159113
Coordinates   2227365..2227892 (-) Length   175 a.a.
NCBI ID   WP_141416186.1    Uniprot ID   -
Organism   Enterococcus faecalis strain 10033598-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2202872..2239330 2227365..2227892 within 0


Gene organization within MGE regions


Location: 2202872..2239330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU995_RS11200 (ABU995_11200) - 2202872..2203957 (-) 1086 WP_265613700.1 SH3 domain-containing protein -
  ABU995_RS11205 (ABU995_11205) - 2203958..2204191 (-) 234 WP_002417568.1 phage holin -
  ABU995_RS11210 (ABU995_11210) - 2204188..2204406 (-) 219 WP_002411210.1 hypothetical protein -
  ABU995_RS11215 (ABU995_11215) - 2204425..2204577 (-) 153 WP_265613701.1 XkdX family protein -
  ABU995_RS11220 (ABU995_11220) - 2204577..2204951 (-) 375 WP_265613702.1 hypothetical protein -
  ABU995_RS11225 (ABU995_11225) - 2204967..2205530 (-) 564 WP_353630027.1 hypothetical protein -
  ABU995_RS11230 (ABU995_11230) - 2205530..2205847 (-) 318 WP_010823521.1 hypothetical protein -
  ABU995_RS11235 (ABU995_11235) - 2205840..2206157 (-) 318 WP_010783717.1 hypothetical protein -
  ABU995_RS11240 (ABU995_11240) - 2206150..2207058 (-) 909 WP_265613703.1 phage baseplate upper protein -
  ABU995_RS11245 (ABU995_11245) - 2207076..2209880 (-) 2805 WP_002393021.1 phage tail tip lysozyme -
  ABU995_RS11250 (ABU995_11250) - 2209877..2210590 (-) 714 WP_265613704.1 phage tail protein -
  ABU995_RS11255 (ABU995_11255) - 2210587..2212890 (-) 2304 WP_353630028.1 phage tail tape measure protein -
  ABU995_RS11260 (ABU995_11260) - 2213082..2213537 (-) 456 WP_002395308.1 hypothetical protein -
  ABU995_RS11265 (ABU995_11265) - 2213537..2214184 (-) 648 WP_002395307.1 major tail protein -
  ABU995_RS11270 (ABU995_11270) - 2214181..2214543 (-) 363 WP_002395306.1 HK97-gp10 family putative phage morphogenesis protein -
  ABU995_RS11275 (ABU995_11275) - 2214533..2214871 (-) 339 WP_002395305.1 hypothetical protein -
  ABU995_RS11280 (ABU995_11280) - 2214861..2215181 (-) 321 WP_172766511.1 phage head closure protein -
  ABU995_RS11285 (ABU995_11285) - 2215168..2215434 (-) 267 WP_258080224.1 head-tail connector protein -
  ABU995_RS11290 (ABU995_11290) - 2215576..2216736 (-) 1161 WP_104876156.1 phage major capsid protein -
  ABU995_RS11295 (ABU995_11295) - 2216733..2217407 (-) 675 WP_162780846.1 head maturation protease, ClpP-related -
  ABU995_RS11300 (ABU995_11300) - 2217388..2218569 (-) 1182 WP_104876158.1 phage portal protein -
  ABU995_RS11305 (ABU995_11305) - 2218584..2220275 (-) 1692 WP_205216854.1 terminase TerL endonuclease subunit -
  ABU995_RS11310 (ABU995_11310) - 2220277..2220639 (-) 363 WP_104876160.1 hypothetical protein -
  ABU995_RS11315 (ABU995_11315) - 2220725..2221051 (-) 327 WP_195805364.1 HNH endonuclease -
  ABU995_RS11325 (ABU995_11325) - 2222342..2222479 (+) 138 WP_010773976.1 hypothetical protein -
  ABU995_RS11330 (ABU995_11330) - 2222515..2222784 (-) 270 WP_172766510.1 hypothetical protein -
  ABU995_RS11335 (ABU995_11335) - 2223070..2223486 (-) 417 WP_002357362.1 ArpU family phage packaging/lysis transcriptional regulator -
  ABU995_RS11340 (ABU995_11340) - 2223876..2224058 (-) 183 WP_172766509.1 hypothetical protein -
  ABU995_RS11345 (ABU995_11345) - 2224058..2224219 (-) 162 WP_164978496.1 hypothetical protein -
  ABU995_RS11350 (ABU995_11350) - 2224220..2224711 (-) 492 WP_078122593.1 DUF1642 domain-containing protein -
  ABU995_RS11355 (ABU995_11355) - 2224714..2224953 (-) 240 WP_074653948.1 hypothetical protein -
  ABU995_RS11360 (ABU995_11360) - 2224965..2225216 (-) 252 WP_086317731.1 hypothetical protein -
  ABU995_RS11365 (ABU995_11365) - 2225213..2225536 (-) 324 WP_089201922.1 DNA-directed RNA polymerase subunit delta -
  ABU995_RS11370 (ABU995_11370) - 2225542..2225778 (-) 237 WP_078122596.1 hypothetical protein -
  ABU995_RS11375 (ABU995_11375) - 2225775..2226017 (-) 243 WP_063855929.1 hypothetical protein -
  ABU995_RS11380 (ABU995_11380) - 2226017..2226355 (-) 339 WP_063855928.1 hypothetical protein -
  ABU995_RS11385 (ABU995_11385) - 2226352..2226738 (-) 387 WP_095715052.1 YopX family protein -
  ABU995_RS11390 (ABU995_11390) - 2226798..2227004 (-) 207 WP_002395701.1 hypothetical protein -
  ABU995_RS11395 (ABU995_11395) - 2227024..2227353 (-) 330 WP_174098288.1 hypothetical protein -
  ABU995_RS11400 (ABU995_11400) ssb 2227365..2227892 (-) 528 WP_141416186.1 single-stranded DNA-binding protein Machinery gene
  ABU995_RS11405 (ABU995_11405) - 2227897..2228748 (-) 852 WP_353630029.1 helix-turn-helix domain-containing protein -
  ABU995_RS11410 (ABU995_11410) - 2228752..2229393 (-) 642 WP_002365158.1 putative HNHc nuclease -
  ABU995_RS11415 (ABU995_11415) - 2229398..2230414 (-) 1017 WP_002365157.1 AAA family ATPase -
  ABU995_RS11420 (ABU995_11420) - 2230426..2230905 (-) 480 WP_002381628.1 siphovirus Gp157 family protein -
  ABU995_RS11425 (ABU995_11425) - 2230889..2231011 (-) 123 WP_258076781.1 hypothetical protein -
  ABU995_RS11430 (ABU995_11430) - 2231070..2231459 (+) 390 WP_172766506.1 hypothetical protein -
  ABU995_RS11435 (ABU995_11435) - 2231480..2231740 (+) 261 WP_353630030.1 hypothetical protein -
  ABU995_RS11440 (ABU995_11440) - 2231721..2231924 (-) 204 WP_104876171.1 hypothetical protein -
  ABU995_RS11445 (ABU995_11445) - 2231917..2232108 (-) 192 WP_104876172.1 hypothetical protein -
  ABU995_RS11450 (ABU995_11450) - 2232123..2232311 (-) 189 WP_104876173.1 hypothetical protein -
  ABU995_RS11455 (ABU995_11455) - 2232322..2233032 (-) 711 WP_353630031.1 Rha family transcriptional regulator -
  ABU995_RS11460 (ABU995_11460) - 2233112..2233534 (+) 423 WP_010828994.1 hypothetical protein -
  ABU995_RS11465 (ABU995_11465) - 2233733..2233921 (+) 189 WP_010822646.1 hypothetical protein -
  ABU995_RS11470 (ABU995_11470) - 2233911..2234066 (-) 156 WP_010822645.1 hypothetical protein -
  ABU995_RS11475 (ABU995_11475) - 2234072..2234278 (-) 207 WP_010826247.1 hypothetical protein -
  ABU995_RS11480 (ABU995_11480) - 2234317..2234586 (-) 270 WP_002404536.1 hypothetical protein -
  ABU995_RS11485 (ABU995_11485) - 2234662..2234976 (+) 315 WP_023042504.1 hypothetical protein -
  ABU995_RS11490 (ABU995_11490) - 2234957..2235085 (-) 129 WP_023042505.1 hypothetical protein -
  ABU995_RS11495 (ABU995_11495) - 2235101..2235277 (-) 177 WP_002385636.1 helix-turn-helix transcriptional regulator -
  ABU995_RS11500 (ABU995_11500) - 2235361..2235744 (+) 384 WP_002385635.1 DUF2513 domain-containing protein -
  ABU995_RS11505 (ABU995_11505) - 2235741..2235950 (-) 210 WP_002415277.1 MW1434 family type I TA system toxin -
  ABU995_RS11510 (ABU995_11510) - 2236255..2236578 (+) 324 WP_010707137.1 helix-turn-helix transcriptional regulator -
  ABU995_RS11515 (ABU995_11515) - 2236597..2236941 (+) 345 WP_002373917.1 ImmA/IrrE family metallo-endopeptidase -
  ABU995_RS11520 (ABU995_11520) - 2236967..2237200 (-) 234 WP_002367290.1 hypothetical protein -
  ABU995_RS11525 (ABU995_11525) - 2237290..2237973 (+) 684 WP_129194668.1 hypothetical protein -
  ABU995_RS11530 (ABU995_11530) - 2238149..2239330 (+) 1182 WP_353630032.1 site-specific integrase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19312.21 Da        Isoelectric Point: 4.7078

>NTDB_id=1012247 ABU995_RS11400 WP_141416186.1 2227365..2227892(-) (ssb) [Enterococcus faecalis strain 10033598-2]
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNSSQQMSFGGDVDPFA
GAGNSIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1012247 ABU995_RS11400 WP_141416186.1 2227365..2227892(-) (ssb) [Enterococcus faecalis strain 10033598-2]
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAATCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCAGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAGCAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.989

100

0.6
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.865

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

60.571

0.366

Multiple sequence alignment