Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H1W81_RS08260 Genome accession   NZ_LR824002
Coordinates   1593833..1594792 (-) Length   319 a.a.
NCBI ID   WP_041828150.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_67     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1588833..1599792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W81_RS08245 (STHERMO_1854) - 1589950..1591065 (-) 1116 WP_011225573.1 peptidyl-prolyl cis-trans isomerase -
  H1W81_RS08250 (STHERMO_1855) - 1591127..1591834 (-) 708 WP_002946027.1 O-methyltransferase -
  H1W81_RS08255 (STHERMO_1857) pepF 1592017..1593822 (-) 1806 WP_011225572.1 oligoendopeptidase F Regulator
  H1W81_RS08260 (STHERMO_1858) coiA 1593833..1594792 (-) 960 WP_041828150.1 competence protein CoiA Machinery gene
  H1W81_RS08265 (STHERMO_1860) - 1596090..1596986 (+) 897 WP_179971696.1 LysR family transcriptional regulator -
  H1W81_RS08270 (STHERMO_1861) metG 1597264..1599267 (-) 2004 WP_002948122.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38070.01 Da        Isoelectric Point: 9.4171

>NTDB_id=1012187 H1W81_RS08260 WP_041828150.1 1593833..1594792(-) (coiA) [Streptococcus thermophilus isolate STH_CIRM_67]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWKREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKHGFVQIRLSIDGFEKLFMQYYRKRDFSYKQTLCPPNFYAKIVDYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1012187 H1W81_RS08260 WP_041828150.1 1593833..1594792(-) (coiA) [Streptococcus thermophilus isolate STH_CIRM_67]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTAGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCCACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCGTTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTACGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTTTGGGAACTTGATTGGAAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGACAGGAGGAGGCTTATCTTAAGGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCTGAGTCTAAGCATGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTCATGCAGTATTATC
GAAAAAGGGATTTTTCTTACAAGCAAACCCTGTGCCCTCCCAACTTTTATGCTAAAATAGTAGATTATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.016

97.492

0.439
  coiA Streptococcus pneumoniae Rx1

45.016

97.492

0.439
  coiA Streptococcus pneumoniae D39

45.016

97.492

0.439
  coiA Streptococcus pneumoniae R6

45.016

97.492

0.439
  coiA Streptococcus mitis NCTC 12261

45.016

97.492

0.439