Detailed information NTG1011950

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: ABUH86_RS16900
• Genome accession: NZ_CP158669
• Coordinates: 3419676..3420839 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus velezensis strain XY40-1
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3414676..3425839

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABUH86_RS16870 (ABUH86_16870)	-	3414940..3415359 (-)	420	WP_012118571.1	TIGR03826 family flagellar region protein	-
ABUH86_RS16875 (ABUH86_16875)	comFC	3415433..3416122 (-)	690	WP_197200179.1	double zinc ribbon domain-containing protein	Machinery gene
ABUH86_RS16880 (ABUH86_16880)	-	3416128..3416412 (-)	285	WP_007407481.1	competence protein ComFB	-
ABUH86_RS16885 (ABUH86_16885)	comFA	3416470..3417855 (-)	1386	WP_220007557.1	DEAD/DEAH box helicase	Machinery gene
ABUH86_RS16890 (ABUH86_16890)	-	3417964..3418812 (-)	849	WP_136396659.1	DegV family protein	-
ABUH86_RS16895 (ABUH86_16895)	degU	3418910..3419599 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
ABUH86_RS16900 (ABUH86_16900)	degS	3419676..3420839 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
ABUH86_RS16905 (ABUH86_16905)	-	3421062..3421709 (+)	648	WP_061581228.1	YigZ family protein	-
ABUH86_RS16910 (ABUH86_16910)	-	3421714..3422934 (+)	1221	WP_012118574.1	LCP family protein	-
ABUH86_RS16915 (ABUH86_16915)	-	3423033..3424109 (-)	1077	WP_003151382.1	MraY family glycosyltransferase	-
ABUH86_RS16920 (ABUH86_16920)	-	3424242..3425438 (-)	1197	WP_069006925.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=1011950 ABUH86_RS16900 WP_007407484.1 3419676..3420839(-) (degS) [Bacillus velezensis strain XY40-1]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=1011950 ABUH86_RS16900 WP_007407484.1 3419676..3420839(-) (degS) [Bacillus velezensis strain XY40-1]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGACCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951