Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABUH86_RS16885 Genome accession   NZ_CP158669
Coordinates   3416470..3417855 (-) Length   461 a.a.
NCBI ID   WP_220007557.1    Uniprot ID   -
Organism   Bacillus velezensis strain XY40-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3411470..3422855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS16850 (ABUH86_16850) flgL 3411645..3412562 (-) 918 WP_327975730.1 flagellar hook-associated protein FlgL -
  ABUH86_RS16855 (ABUH86_16855) flgK 3412574..3414091 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  ABUH86_RS16860 (ABUH86_16860) - 3414107..3414589 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ABUH86_RS16865 (ABUH86_16865) flgM 3414604..3414870 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABUH86_RS16870 (ABUH86_16870) - 3414940..3415359 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ABUH86_RS16875 (ABUH86_16875) comFC 3415433..3416122 (-) 690 WP_197200179.1 double zinc ribbon domain-containing protein Machinery gene
  ABUH86_RS16880 (ABUH86_16880) - 3416128..3416412 (-) 285 WP_007407481.1 competence protein ComFB -
  ABUH86_RS16885 (ABUH86_16885) comFA 3416470..3417855 (-) 1386 WP_220007557.1 DEAD/DEAH box helicase Machinery gene
  ABUH86_RS16890 (ABUH86_16890) - 3417964..3418812 (-) 849 WP_136396659.1 DegV family protein -
  ABUH86_RS16895 (ABUH86_16895) degU 3418910..3419599 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABUH86_RS16900 (ABUH86_16900) degS 3419676..3420839 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABUH86_RS16905 (ABUH86_16905) - 3421062..3421709 (+) 648 WP_061581228.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52614.93 Da        Isoelectric Point: 10.2458

>NTDB_id=1011948 ABUH86_RS16885 WP_220007557.1 3416470..3417855(-) (comFA) [Bacillus velezensis strain XY40-1]
MSEGASEFSEVRDFFYGRHLLRSDIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQSHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVYAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1011948 ABUH86_RS16885 WP_220007557.1 3416470..3417855(-) (comFA) [Bacillus velezensis strain XY40-1]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGATATACCGTT
TTCAGACCAGCGCATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAATCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAATCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTTATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618

Multiple sequence alignment