Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABUH86_RS16895 Genome accession   NZ_CP158669
Coordinates   3418910..3419599 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain XY40-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3413910..3424599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS16860 (ABUH86_16860) - 3414107..3414589 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ABUH86_RS16865 (ABUH86_16865) flgM 3414604..3414870 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABUH86_RS16870 (ABUH86_16870) - 3414940..3415359 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ABUH86_RS16875 (ABUH86_16875) comFC 3415433..3416122 (-) 690 WP_197200179.1 double zinc ribbon domain-containing protein Machinery gene
  ABUH86_RS16880 (ABUH86_16880) - 3416128..3416412 (-) 285 WP_007407481.1 competence protein ComFB -
  ABUH86_RS16885 (ABUH86_16885) comFA 3416470..3417855 (-) 1386 WP_220007557.1 DEAD/DEAH box helicase Machinery gene
  ABUH86_RS16890 (ABUH86_16890) - 3417964..3418812 (-) 849 WP_136396659.1 DegV family protein -
  ABUH86_RS16895 (ABUH86_16895) degU 3418910..3419599 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABUH86_RS16900 (ABUH86_16900) degS 3419676..3420839 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABUH86_RS16905 (ABUH86_16905) - 3421062..3421709 (+) 648 WP_061581228.1 YigZ family protein -
  ABUH86_RS16910 (ABUH86_16910) - 3421714..3422934 (+) 1221 WP_012118574.1 LCP family protein -
  ABUH86_RS16915 (ABUH86_16915) - 3423033..3424109 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1011949 ABUH86_RS16895 WP_003219701.1 3418910..3419599(-) (degU) [Bacillus velezensis strain XY40-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1011949 ABUH86_RS16895 WP_003219701.1 3418910..3419599(-) (degU) [Bacillus velezensis strain XY40-1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment