Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ABUH86_RS11990 Genome accession   NZ_CP158669
Coordinates   2478286..2479356 (-) Length   356 a.a.
NCBI ID   WP_003153083.1    Uniprot ID   -
Organism   Bacillus velezensis strain XY40-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2473286..2484356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS11940 (ABUH86_11940) sipW 2473345..2473917 (-) 573 WP_136396777.1 signal peptidase I SipW -
  ABUH86_RS11945 (ABUH86_11945) tapA 2473901..2474572 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  ABUH86_RS11950 (ABUH86_11950) - 2474831..2475160 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  ABUH86_RS11955 (ABUH86_11955) - 2475201..2475380 (-) 180 WP_003153093.1 YqzE family protein -
  ABUH86_RS11960 (ABUH86_11960) comGG 2475437..2475814 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABUH86_RS11965 (ABUH86_11965) comGF 2475815..2476315 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  ABUH86_RS11970 (ABUH86_11970) comGE 2476224..2476538 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  ABUH86_RS11975 (ABUH86_11975) comGD 2476522..2476959 (-) 438 WP_052827646.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABUH86_RS11980 (ABUH86_11980) comGC 2476949..2477257 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  ABUH86_RS11985 (ABUH86_11985) comGB 2477262..2478299 (-) 1038 WP_012117984.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABUH86_RS11990 (ABUH86_11990) comGA 2478286..2479356 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  ABUH86_RS11995 (ABUH86_11995) - 2479550..2480500 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  ABUH86_RS12000 (ABUH86_12000) - 2480646..2481947 (+) 1302 WP_021494315.1 hemolysin family protein -
  ABUH86_RS12005 (ABUH86_12005) - 2481985..2482815 (-) 831 WP_007408317.1 STAS domain-containing protein -
  ABUH86_RS12015 (ABUH86_12015) - 2483022..2483402 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ABUH86_RS12020 (ABUH86_12020) - 2483640..2483885 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.85 Da        Isoelectric Point: 9.4729

>NTDB_id=1011930 ABUH86_RS11990 WP_003153083.1 2478286..2479356(-) (comGA) [Bacillus velezensis strain XY40-1]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1011930 ABUH86_RS11990 WP_003153083.1 2478286..2479356(-) (comGA) [Bacillus velezensis strain XY40-1]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTAAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCAGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGAGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGGCACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAA
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment