Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACKTTY_RS00040 | Genome accession | NZ_AP027463 |
| Coordinates | 10530..11147 (+) | Length | 205 a.a. |
| NCBI ID | WP_308701887.1 | Uniprot ID | - |
| Organism | Lactiplantibacillus brownii strain MH-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5530..16147
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTTY_RS00030 (MH1LPH_00060) | gyrA | 7358..9931 (+) | 2574 | WP_308701885.1 | DNA gyrase subunit A | - |
| ACKTTY_RS00035 (MH1LPH_00070) | rpsF | 10192..10491 (+) | 300 | WP_308701886.1 | 30S ribosomal protein S6 | - |
| ACKTTY_RS00040 (MH1LPH_00080) | ssb | 10530..11147 (+) | 618 | WP_308701887.1 | single-stranded DNA-binding protein | Machinery gene |
| ACKTTY_RS00045 (MH1LPH_00090) | rpsR | 11183..11419 (+) | 237 | WP_057705745.1 | 30S ribosomal protein S18 | - |
| ACKTTY_RS00050 (MH1LPH_00100) | - | 11771..13783 (+) | 2013 | WP_308701888.1 | DHH family phosphoesterase | - |
| ACKTTY_RS00055 (MH1LPH_00110) | rplI | 13796..14248 (+) | 453 | WP_308701889.1 | 50S ribosomal protein L9 | - |
| ACKTTY_RS00060 (MH1LPH_00120) | dnaB | 14264..15697 (+) | 1434 | WP_308701890.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 205 a.a. Molecular weight: 21976.32 Da Isoelectric Point: 4.7560
>NTDB_id=101143 ACKTTY_RS00040 WP_308701887.1 10530..11147(+) (ssb) [Lactiplantibacillus brownii strain MH-1]
MINRSVLVGRLTRDPELRYTSGGAAVASFTLAVNRSFTNQNGEREADFINCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESERHQTANGGNGSSNNAGYNNNNGYNRQDQNAAPQQSSSNNNNNPFGNGNPA
SAASSNAPAGNGNNGAPTSGSNNNQADPFANNGDQIDISDDDLPF
MINRSVLVGRLTRDPELRYTSGGAAVASFTLAVNRSFTNQNGEREADFINCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESERHQTANGGNGSSNNAGYNNNNGYNRQDQNAAPQQSSSNNNNNPFGNGNPA
SAASSNAPAGNGNNGAPTSGSNNNQADPFANNGDQIDISDDDLPF
Nucleotide
Download Length: 618 bp
>NTDB_id=101143 ACKTTY_RS00040 WP_308701887.1 10530..11147(+) (ssb) [Lactiplantibacillus brownii strain MH-1]
ATGATTAACCGTTCAGTTCTTGTTGGCCGACTAACAAGAGATCCCGAATTACGATACACTTCTGGTGGTGCCGCGGTGGC
ATCGTTCACTTTGGCCGTTAACCGGAGTTTTACTAATCAAAATGGGGAACGTGAAGCTGATTTCATCAATTGCGTCATTT
GGCGTAAGGCTGCTGAAAATTTTGCAAACTTCACCCATAAAGGGTCACTTGTTGGGATTGATGGCCGGATTCAAACCCGG
AACTATGAAAACCAACAAGGGCAACGAGTTTATGTTACAGAAGTGGTCGTTGACAACTTCTCATTATTAGAATCACGCGC
AGAATCTGAGCGTCATCAGACTGCAAATGGCGGTAACGGCAGTAGTAATAATGCTGGTTACAATAATAACAATGGGTACA
ATCGTCAAGACCAAAATGCAGCTCCTCAACAATCTTCATCGAATAACAATAACAATCCTTTTGGTAATGGTAATCCGGCA
AGTGCTGCGAGCTCAAATGCGCCAGCTGGTAATGGTAATAATGGTGCCCCAACGAGTGGGTCCAATAATAACCAAGCCGA
TCCATTTGCCAATAATGGGGATCAAATTGATATTTCGGATGATGATTTACCATTCTAG
ATGATTAACCGTTCAGTTCTTGTTGGCCGACTAACAAGAGATCCCGAATTACGATACACTTCTGGTGGTGCCGCGGTGGC
ATCGTTCACTTTGGCCGTTAACCGGAGTTTTACTAATCAAAATGGGGAACGTGAAGCTGATTTCATCAATTGCGTCATTT
GGCGTAAGGCTGCTGAAAATTTTGCAAACTTCACCCATAAAGGGTCACTTGTTGGGATTGATGGCCGGATTCAAACCCGG
AACTATGAAAACCAACAAGGGCAACGAGTTTATGTTACAGAAGTGGTCGTTGACAACTTCTCATTATTAGAATCACGCGC
AGAATCTGAGCGTCATCAGACTGCAAATGGCGGTAACGGCAGTAGTAATAATGCTGGTTACAATAATAACAATGGGTACA
ATCGTCAAGACCAAAATGCAGCTCCTCAACAATCTTCATCGAATAACAATAACAATCCTTTTGGTAATGGTAATCCGGCA
AGTGCTGCGAGCTCAAATGCGCCAGCTGGTAATGGTAATAATGGTGCCCCAACGAGTGGGTCCAATAATAACCAAGCCGA
TCCATTTGCCAATAATGGGGATCAAATTGATATTTCGGATGATGATTTACCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.927 |
100 |
0.629 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.122 |
100 |
0.551 |