Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   ABR328_RS13240 Genome accession   NZ_CP158462
Coordinates   2518958..2520199 (+) Length   413 a.a.
NCBI ID   WP_003565798.1    Uniprot ID   A0A0C9PVU8
Organism   Lacticaseibacillus paracasei strain TCI727     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2513958..2525199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR328_RS13215 (ABR328_13215) tsf 2514419..2515300 (+) 882 WP_016371499.1 translation elongation factor Ts -
  ABR328_RS13220 (ABR328_13220) pyrH 2515536..2516255 (+) 720 WP_003565806.1 UMP kinase -
  ABR328_RS13225 (ABR328_13225) frr 2516255..2516812 (+) 558 WP_003598868.1 ribosome recycling factor -
  ABR328_RS13230 (ABR328_13230) - 2517365..2518117 (+) 753 WP_350345839.1 isoprenyl transferase -
  ABR328_RS13235 (ABR328_13235) - 2518153..2518941 (+) 789 WP_003565800.1 phosphatidate cytidylyltransferase -
  ABR328_RS13240 (ABR328_13240) eeP 2518958..2520199 (+) 1242 WP_003565798.1 RIP metalloprotease RseP Regulator
  ABR328_RS13245 (ABR328_13245) - 2520224..2521951 (+) 1728 WP_011674540.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45107.72 Da        Isoelectric Point: 8.6663

>NTDB_id=1011397 ABR328_RS13240 WP_003565798.1 2518958..2520199(+) (eeP) [Lacticaseibacillus paracasei strain TCI727]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSLILNDQGKVVRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDETALQTWQVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLLVNFAGPMNNFLLAILAFIIYGLFFGVQVLNTNQIGTVVPGYPAAEAGLKSNATVQTIDGQKMSSFTDL
SKIVSKNAGKSVTFTVKENGKSKNIVIKPNKEGKIGVEAHVDKSPANAIPFGFSQTWNLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGIQGLLFFMGYLSLGLGITNLLPIPVLDGGKILLNLIEIIRRKPLKPETEGVVTMIGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1011397 ABR328_RS13240 WP_003565798.1 2518958..2520199(+) (eeP) [Lacticaseibacillus paracasei strain TCI727]
ATGACCACTATCATCGCCTTCATCGTTATCTTCTGCATTCTTGTGGTAGTTCACGAGTTTGGCCATTTTTACTTTGCAAA
ACGCAGCGGCATTCTAGTCCGGGAATTTTCGATCGGTATGGGCCCGAAGCTGTGGGCGTCGCACAAGAACAATACGACCT
ACACGCTGCGGTTGCTACCACTTGGCGGATACGTCCGCATGGCTGGCTGGCAAGATGAGGAGGACGAGATTAAGCCCGGG
ACGATGCTGAGCCTGATTCTTAACGATCAAGGCAAGGTTGTCCGGATTAATGCCAGTGACAAAACGACTTTGGCCGGCGG
AATGCCGGTTCAAGTGAGTCGCGTCGATTTAGTTAAGGATCTGGTGATTGAAGGTTATCCAAACGGGGATGAAACAGCCT
TGCAAACTTGGCAGGTTGACCACGATGCGACGATCATTGAAGAAGACGGAACCGAGGTTCAGATCGCGCCAGAAGACGTT
CAGTTTCAAAACGCCCCGGTTTGGCGCCGGTTATTGGTCAACTTCGCCGGTCCGATGAATAACTTCTTACTCGCGATTCT
AGCTTTTATTATTTACGGTCTGTTTTTTGGTGTTCAGGTGCTCAATACCAACCAAATCGGAACAGTTGTGCCAGGTTATC
CAGCCGCAGAAGCTGGTCTTAAGTCCAATGCGACGGTGCAAACGATTGACGGTCAAAAAATGTCATCATTCACGGATCTT
TCAAAGATCGTCAGTAAAAATGCCGGTAAATCAGTGACATTTACCGTGAAGGAAAACGGTAAAAGCAAGAACATCGTGAT
CAAGCCGAATAAAGAAGGCAAGATCGGGGTTGAAGCACACGTCGATAAGTCCCCAGCAAATGCCATTCCTTTTGGTTTTT
CTCAAACTTGGAATTTGGCTGTCCGCACTTGGGACGTGCTCAAATCCATGGTGACCGGCGGTTTTTCACTCAATAAACTG
GCTGGCCCGGTTGGTATTTATACCATGACGAGTCAAAGTGCCAAAGGCGGTATTCAAGGATTACTCTTCTTTATGGGTTA
CTTGAGTCTCGGCTTAGGGATTACCAATTTGTTGCCGATTCCAGTGCTTGATGGTGGTAAAATTCTTTTGAACCTGATCG
AAATTATTCGCCGTAAGCCATTAAAACCGGAAACGGAAGGCGTTGTGACCATGATTGGCTTGGGCCTGATGGTTCTATTA
ATGCTAGCGGTCACAATTAACGATATCATGCGCTACTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PVU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.292

100

0.506
  eeP Streptococcus thermophilus LMD-9

49.057

100

0.504

Multiple sequence alignment