Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H1W87_RS02355 Genome accession   NZ_LR822037
Coordinates   434681..435637 (+) Length   318 a.a.
NCBI ID   WP_180478426.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 429681..440637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W87_RS02345 (STHERMO_0490) metG 430204..432207 (+) 2004 WP_002948122.1 methionine--tRNA ligase -
  H1W87_RS02350 (STHERMO_0491) - 432485..433381 (-) 897 WP_002948119.1 LysR family transcriptional regulator -
  H1W87_RS02355 (STHERMO_0494) coiA 434681..435637 (+) 957 WP_180478426.1 competence protein CoiA Machinery gene
  H1W87_RS02360 (STHERMO_0495) pepF 435673..437478 (+) 1806 WP_022096920.1 oligoendopeptidase F Regulator
  H1W87_RS02365 (STHERMO_0496) - 437662..438369 (+) 708 WP_002946027.1 O-methyltransferase -
  H1W87_RS02370 (STHERMO_0497) - 438431..439573 (+) 1143 WP_180478427.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37879.82 Da        Isoelectric Point: 8.9127

>NTDB_id=1011337 H1W87_RS02355 WP_180478426.1 434681..435637(+) (coiA) [Streptococcus thermophilus isolate STH_CIRM_1121]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWEREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKHGFVQIRLSIDGFEKLFMQYYRKRDFSYKQTLCPPNFYAKIVDYIC

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1011337 H1W87_RS02355 WP_180478426.1 434681..435637(+) (coiA) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTGGTTTCGGCTCTTGAAAATGGATTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCCACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCGTTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTACGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTTTGGGAACTTGATTGGGAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAGGAGGCTTATCTTAAAGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCTGAGTCTAAGCATGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTCATGCAGTATTATC
GAAAAAGGGATTTTTCTTACAAGCAAACCCTGTGCCCTCCCAACTTTTATGCTAAAATAGTAGATTATATATGCTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.799

0.443
  coiA Streptococcus mitis NCTC 12261

45.338

97.799

0.443
  coiA Streptococcus pneumoniae Rx1

45.016

97.799

0.44
  coiA Streptococcus pneumoniae D39

45.016

97.799

0.44
  coiA Streptococcus pneumoniae R6

45.016

97.799

0.44