Detailed information NTG1010888

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: ABOE65_RS16690
• Genome accession: NZ_CP158358
• Coordinates: 3358882..3360045 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus velezensis strain HY23
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3353882..3365045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABOE65_RS16660 (ABOE65_16645)	-	3354147..3354566 (-)	420	WP_012118571.1	TIGR03826 family flagellar region protein	-
ABOE65_RS16665 (ABOE65_16650)	comFC	3354640..3355329 (-)	690	WP_197197403.1	double zinc ribbon domain-containing protein	Machinery gene
ABOE65_RS16670 (ABOE65_16655)	-	3355335..3355619 (-)	285	WP_007407481.1	competence protein ComFB	-
ABOE65_RS16675 (ABOE65_16660)	comFA	3355677..3357062 (-)	1386	WP_012118573.1	DEAD/DEAH box helicase	Machinery gene
ABOE65_RS16680 (ABOE65_16665)	-	3357170..3358018 (-)	849	WP_003151387.1	DegV family protein	-
ABOE65_RS16685 (ABOE65_16670)	degU	3358116..3358805 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
ABOE65_RS16690 (ABOE65_16675)	degS	3358882..3360045 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
ABOE65_RS16695 (ABOE65_16680)	-	3360268..3360915 (+)	648	WP_007614107.1	YigZ family protein	-
ABOE65_RS16700 (ABOE65_16685)	-	3360920..3362140 (+)	1221	WP_012118574.1	LCP family protein	-
ABOE65_RS16705 (ABOE65_16690)	-	3362239..3363315 (-)	1077	WP_003151382.1	MraY family glycosyltransferase	-
ABOE65_RS16710 (ABOE65_16695)	-	3363448..3364644 (-)	1197	WP_012118575.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=1010888 ABOE65_RS16690 WP_007407484.1 3358882..3360045(-) (degS) [Bacillus velezensis strain HY23]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=1010888 ABOE65_RS16690 WP_007407484.1 3358882..3360045(-) (degS) [Bacillus velezensis strain HY23]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTTAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGGGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951