Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABOE65_RS16665 Genome accession   NZ_CP158358
Coordinates   3354640..3355329 (-) Length   229 a.a.
NCBI ID   WP_197197403.1    Uniprot ID   -
Organism   Bacillus velezensis strain HY23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3349640..3360329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOE65_RS16630 (ABOE65_16615) fliW 3349731..3350162 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  ABOE65_RS16635 (ABOE65_16620) - 3350192..3350761 (-) 570 WP_023357152.1 DUF6470 family protein -
  ABOE65_RS16640 (ABOE65_16625) flgL 3350852..3351769 (-) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  ABOE65_RS16645 (ABOE65_16630) flgK 3351781..3353298 (-) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  ABOE65_RS16650 (ABOE65_16635) - 3353314..3353796 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ABOE65_RS16655 (ABOE65_16640) flgM 3353811..3354077 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABOE65_RS16660 (ABOE65_16645) - 3354147..3354566 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ABOE65_RS16665 (ABOE65_16650) comFC 3354640..3355329 (-) 690 WP_197197403.1 double zinc ribbon domain-containing protein Machinery gene
  ABOE65_RS16670 (ABOE65_16655) - 3355335..3355619 (-) 285 WP_007407481.1 competence protein ComFB -
  ABOE65_RS16675 (ABOE65_16660) comFA 3355677..3357062 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  ABOE65_RS16680 (ABOE65_16665) - 3357170..3358018 (-) 849 WP_003151387.1 DegV family protein -
  ABOE65_RS16685 (ABOE65_16670) degU 3358116..3358805 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABOE65_RS16690 (ABOE65_16675) degS 3358882..3360045 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25201.86 Da        Isoelectric Point: 8.4871

>NTDB_id=1010885 ABOE65_RS16665 WP_197197403.1 3354640..3355329(-) (comFC) [Bacillus velezensis strain HY23]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSATGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1010885 ABOE65_RS16665 WP_197197403.1 3354640..3355329(-) (comFC) [Bacillus velezensis strain HY23]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CACAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment