Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H1W91_RS02370 Genome accession   NZ_LR822032
Coordinates   435413..436372 (+) Length   319 a.a.
NCBI ID   WP_180476812.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 430413..441372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W91_RS02360 (STHERMO_0483) metG 430937..432940 (+) 2004 WP_002948122.1 methionine--tRNA ligase -
  H1W91_RS02365 (STHERMO_0484) - 433218..434114 (-) 897 WP_002948119.1 LysR family transcriptional regulator -
  H1W91_RS02370 (STHERMO_0487) coiA 435413..436372 (+) 960 WP_180476812.1 competence protein CoiA Machinery gene
  H1W91_RS02375 (STHERMO_0488) pepF 436383..438188 (+) 1806 WP_180476813.1 oligoendopeptidase F Regulator
  H1W91_RS02380 (STHERMO_0489) - 438372..439079 (+) 708 WP_002946027.1 O-methyltransferase -
  H1W91_RS02385 (STHERMO_0490) - 439141..440256 (+) 1116 WP_180476815.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38100.98 Da        Isoelectric Point: 9.1721

>NTDB_id=1010800 H1W91_RS02370 WP_180476812.1 435413..436372(+) (coiA) [Streptococcus thermophilus isolate STH_CIRM_1050]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWEREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKHGFVQIRLSIDSFEKLFMQYYRKRDFSYKQTLCPPNFYAKIVDYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1010800 H1W91_RS02370 WP_180476812.1 435413..436372(+) (coiA) [Streptococcus thermophilus isolate STH_CIRM_1050]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTGGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCCACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCGTTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTACGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTCTGGGAACTTGATTGGGAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAGGAGGCTTATCTTAAAGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCTGAGTCTAAGCATGGATTTGTCCAAATTAGATTATCTATTGATAGTTTTGAAAAGCTTTTCATGCAGTATTATC
GAAAAAGGGATTTTTCTTACAAGCAAACCCTGTGCCCTCCCAACTTTTATGCTAAAATAGTAGATTATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.659

97.492

0.445
  coiA Streptococcus pneumoniae Rx1

45.338

97.492

0.442
  coiA Streptococcus pneumoniae D39

45.338

97.492

0.442
  coiA Streptococcus pneumoniae R6

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

45.338

97.492

0.442