Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H1W91_RS00350 Genome accession   NZ_LR822032
Coordinates   62029..62619 (+) Length   196 a.a.
NCBI ID   WP_002949053.1    Uniprot ID   Q5M6H5
Organism   Streptococcus thermophilus isolate STH_CIRM_1050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57029..67619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W91_RS10370 - 58159..58614 (-) 456 Protein_43 DUF3021 domain-containing protein -
  H1W91_RS00330 (STHERMO_0060) - 58611..59002 (-) 392 Protein_44 LytTR family DNA-binding domain-containing protein -
  H1W91_RS00335 (STHERMO_0061) - 59226..59531 (+) 306 WP_002949050.1 hypothetical protein -
  H1W91_RS00340 (STHERMO_0062) hexB 59583..61526 (+) 1944 WP_180476655.1 DNA mismatch repair endonuclease MutL Machinery gene
  H1W91_RS00345 (STHERMO_0063) - 61656..61877 (+) 222 WP_002949052.1 hypothetical protein -
  H1W91_RS00350 (STHERMO_0064) ruvA 62029..62619 (+) 591 WP_002949053.1 Holliday junction branch migration protein RuvA Machinery gene
  H1W91_RS00355 (STHERMO_0065) - 62626..63180 (+) 555 WP_011225284.1 DNA-3-methyladenine glycosylase I -
  H1W91_RS00360 (STHERMO_0066) cinA 63276..64547 (+) 1272 WP_011225285.1 competence/damage-inducible protein A Machinery gene
  H1W91_RS00365 (STHERMO_0067) recA 64583..65722 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  H1W91_RS00370 (STHERMO_0068) spx 65899..66297 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21699.98 Da        Isoelectric Point: 5.2834

>NTDB_id=1010778 H1W91_RS00350 WP_002949053.1 62029..62619(+) (ruvA) [Streptococcus thermophilus isolate STH_CIRM_1050]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKSTELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1010778 H1W91_RS00350 WP_002949053.1 62029..62619(+) (ruvA) [Streptococcus thermophilus isolate STH_CIRM_1050]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAATCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66

100

0.673
  ruvA Streptococcus pneumoniae R6

66

100

0.673
  ruvA Streptococcus pneumoniae D39

66

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444