Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H1W74_RS06515 Genome accession   NZ_LR822031
Coordinates   1266762..1268255 (-) Length   497 a.a.
NCBI ID   WP_002946410.1    Uniprot ID   Q5M3H4
Organism   Streptococcus thermophilus isolate STH_CIRM_1047     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261762..1273255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W74_RS06485 (STHERMO_1478) - 1261892..1262269 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  H1W74_RS06490 (STHERMO_1479) - 1262274..1262972 (+) 699 WP_022096876.1 ABC transporter ATP-binding protein -
  H1W74_RS06495 (STHERMO_1480) - 1262984..1263769 (+) 786 WP_002951425.1 hypothetical protein -
  H1W74_RS06500 (STHERMO_1481) - 1263819..1264748 (-) 930 WP_002946407.1 ATP-binding cassette domain-containing protein -
  H1W74_RS06505 (STHERMO_1482) amiE 1264741..1265826 (-) 1086 WP_002946408.1 ABC transporter ATP-binding protein Regulator
  H1W74_RS06510 (STHERMO_1483) amiD 1265836..1266762 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H1W74_RS06515 (STHERMO_1484) amiC 1266762..1268255 (-) 1494 WP_002946410.1 ABC transporter permease Regulator
  H1W74_RS06520 (STHERMO_1485) amiA 1268317..1270284 (-) 1968 WP_096811568.1 peptide ABC transporter substrate-binding protein Regulator
  H1W74_RS06525 - 1270488..1270678 (-) 191 Protein_1246 IS3 family transposase -
  H1W74_RS10205 - 1270672..1271082 (-) 411 Protein_1247 ATP-binding cassette domain-containing protein -
  H1W74_RS06540 - 1271114..1271428 (-) 315 Protein_1248 TatD family hydrolase -
  H1W74_RS06545 (STHERMO_1489) - 1271777..1272982 (+) 1206 WP_011227415.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55751.62 Da        Isoelectric Point: 10.0618

>NTDB_id=1010734 H1W74_RS06515 WP_002946410.1 1266762..1268255(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_1047]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1010734 H1W74_RS06515 WP_002946410.1 1266762..1268255(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_1047]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATTTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAAATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACATATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M3H4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

100

100

1
  amiC Streptococcus thermophilus LMD-9

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

97.384

100

0.974