Detailed information NTG1010733

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: H1W74_RS06510
• Genome accession: NZ_LR822031
• Coordinates: 1265836..1266762 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: Q5M3H5
• Organism: Streptococcus thermophilus isolate STH_CIRM_1047
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1260836..1271762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W74_RS06480 (STHERMO_1476)	-	1260914..1261708 (-)	795	WP_022096877.1	HAD-IIB family hydrolase	-
H1W74_RS06485 (STHERMO_1478)	-	1261892..1262269 (+)	378	WP_011226300.1	GntR family transcriptional regulator	-
H1W74_RS06490 (STHERMO_1479)	-	1262274..1262972 (+)	699	WP_022096876.1	ABC transporter ATP-binding protein	-
H1W74_RS06495 (STHERMO_1480)	-	1262984..1263769 (+)	786	WP_002951425.1	hypothetical protein	-
H1W74_RS06500 (STHERMO_1481)	-	1263819..1264748 (-)	930	WP_002946407.1	ATP-binding cassette domain-containing protein	-
H1W74_RS06505 (STHERMO_1482)	amiE	1264741..1265826 (-)	1086	WP_002946408.1	ABC transporter ATP-binding protein	Regulator
H1W74_RS06510 (STHERMO_1483)	amiD	1265836..1266762 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
H1W74_RS06515 (STHERMO_1484)	amiC	1266762..1268255 (-)	1494	WP_002946410.1	ABC transporter permease	Regulator
H1W74_RS06520 (STHERMO_1485)	amiA	1268317..1270284 (-)	1968	WP_096811568.1	peptide ABC transporter substrate-binding protein	Regulator
H1W74_RS06525	-	1270488..1270678 (-)	191	Protein_1246	IS3 family transposase	-
H1W74_RS10205	-	1270672..1271082 (-)	411	Protein_1247	ATP-binding cassette domain-containing protein	-
H1W74_RS06540	-	1271114..1271428 (-)	315	Protein_1248	TatD family hydrolase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=1010733 H1W74_RS06510 WP_002946409.1 1265836..1266762(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1047]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1010733 H1W74_RS06510 WP_002946409.1 1265836..1266762(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1047]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATTATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGATTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

3D structure

• AlphaFold DB: Q5M3H5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964