Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ABRA92_RS01560 | Genome accession | NZ_CP158305 |
| Coordinates | 325403..325981 (+) | Length | 192 a.a. |
| NCBI ID | WP_005480484.1 | Uniprot ID | Q87L63 |
| Organism | Vibrio parahaemolyticus strain VP93 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 320403..330981
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABRA92_RS01545 | oxyR | 320726..321634 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| ABRA92_RS01550 | - | 321690..324260 (-) | 2571 | WP_140088234.1 | PBP1A family penicillin-binding protein | - |
| ABRA92_RS01555 | pilM | 324403..325419 (+) | 1017 | WP_350225672.1 | type IV pilus assembly protein PilM | Machinery gene |
| ABRA92_RS01560 | pilN | 325403..325981 (+) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| ABRA92_RS01565 | pilO | 325974..326567 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ABRA92_RS01570 | pilP | 326557..327072 (+) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| ABRA92_RS01575 | pilQ | 327104..328852 (+) | 1749 | WP_025442303.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| ABRA92_RS01580 | aroK | 329041..329559 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| ABRA92_RS01585 | aroB | 329591..330691 (+) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22438.91 Da Isoelectric Point: 6.6554
>NTDB_id=1010522 ABRA92_RS01560 WP_005480484.1 325403..325981(+) (pilN) [Vibrio parahaemolyticus strain VP93]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=1010522 ABRA92_RS01560 WP_005480484.1 325403..325981(+) (pilN) [Vibrio parahaemolyticus strain VP93]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACTCCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACTCCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |