Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | ABRA92_RS01570 | Genome accession | NZ_CP158305 |
| Coordinates | 326557..327072 (+) | Length | 171 a.a. |
| NCBI ID | WP_005480477.1 | Uniprot ID | Q87L65 |
| Organism | Vibrio parahaemolyticus strain VP93 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 321557..332072
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABRA92_RS01550 | - | 321690..324260 (-) | 2571 | WP_140088234.1 | PBP1A family penicillin-binding protein | - |
| ABRA92_RS01555 | pilM | 324403..325419 (+) | 1017 | WP_350225672.1 | type IV pilus assembly protein PilM | Machinery gene |
| ABRA92_RS01560 | pilN | 325403..325981 (+) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| ABRA92_RS01565 | pilO | 325974..326567 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ABRA92_RS01570 | pilP | 326557..327072 (+) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| ABRA92_RS01575 | pilQ | 327104..328852 (+) | 1749 | WP_025442303.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| ABRA92_RS01580 | aroK | 329041..329559 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| ABRA92_RS01585 | aroB | 329591..330691 (+) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18928.09 Da Isoelectric Point: 10.5314
>NTDB_id=1010524 ABRA92_RS01570 WP_005480477.1 326557..327072(+) (pilP) [Vibrio parahaemolyticus strain VP93]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=1010524 ABRA92_RS01570 WP_005480477.1 326557..327072(+) (pilP) [Vibrio parahaemolyticus strain VP93]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
83.626 |
100 |
0.836 |
| pilP | Vibrio cholerae strain A1552 |
58.14 |
100 |
0.585 |