Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABRA92_RS01555 Genome accession   NZ_CP158305
Coordinates   324403..325419 (+) Length   338 a.a.
NCBI ID   WP_350225672.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP93     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319403..330419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA92_RS01540 - 319827..320555 (-) 729 WP_350225671.1 redoxin family protein -
  ABRA92_RS01545 oxyR 320726..321634 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  ABRA92_RS01550 - 321690..324260 (-) 2571 WP_140088234.1 PBP1A family penicillin-binding protein -
  ABRA92_RS01555 pilM 324403..325419 (+) 1017 WP_350225672.1 type IV pilus assembly protein PilM Machinery gene
  ABRA92_RS01560 pilN 325403..325981 (+) 579 WP_005480484.1 PilN domain-containing protein Machinery gene
  ABRA92_RS01565 pilO 325974..326567 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABRA92_RS01570 pilP 326557..327072 (+) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  ABRA92_RS01575 pilQ 327104..328852 (+) 1749 WP_025442303.1 type IV pilus secretin PilQ family protein Machinery gene
  ABRA92_RS01580 aroK 329041..329559 (+) 519 WP_005381319.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37744.25 Da        Isoelectric Point: 6.8323

>NTDB_id=1010521 ABRA92_RS01555 WP_350225672.1 324403..325419(+) (pilM) [Vibrio parahaemolyticus strain VP93]
MDKLIVTGIDIGHNSLKAVVLKPIGDQYALLGYKEILLKEGIVAENNTINHQEIVKTLKQMKKELPFGAKRVAISVPDNS
VISKKLQIEQSLDESEIEFAVVQAFSHQSPFPVEELSLDFVRLRAEEGMRGTDSYQVFATRKDVVESRVEALQQSGLKPV
LVDVHSQSLGHIWKLAAERFPEKNKYCLLDIGSLASSFTMFTEQGELFHKEFACGTRISMGTSQEDLLSDDAQAKTEQFN
RQVVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPILAEELSHQLALECELLNPLGLFEMKVSKRKRRAADWQHFSTAA
GLAVRGIHWLGGVRAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=1010521 ABRA92_RS01555 WP_350225672.1 324403..325419(+) (pilM) [Vibrio parahaemolyticus strain VP93]
ATGGATAAGCTAATCGTTACCGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCATTGGCGATCA
ATACGCCTTACTGGGTTACAAAGAAATATTACTTAAGGAAGGTATTGTCGCTGAAAATAACACTATAAATCATCAAGAAA
TTGTAAAGACCCTAAAGCAGATGAAAAAAGAGCTGCCTTTTGGGGCAAAGCGAGTGGCAATTTCTGTTCCAGACAACTCA
GTTATTAGCAAGAAACTGCAAATCGAACAAAGCCTTGATGAGAGCGAAATCGAGTTTGCGGTGGTACAAGCTTTTTCTCA
TCAATCTCCTTTTCCTGTGGAAGAACTGAGTTTGGATTTCGTACGCCTTCGTGCGGAAGAAGGGATGCGTGGAACGGACA
GTTATCAAGTATTCGCTACGCGCAAAGATGTGGTTGAAAGCCGAGTTGAGGCGTTACAACAGTCTGGTTTAAAGCCTGTG
TTGGTTGACGTGCACTCTCAAAGCCTAGGTCATATCTGGAAGCTTGCCGCAGAGCGTTTTCCTGAAAAAAACAAATACTG
TTTGTTAGACATCGGCTCGTTAGCGAGTTCATTCACCATGTTTACCGAGCAAGGCGAACTGTTTCATAAGGAGTTTGCGT
GCGGTACTCGTATCTCAATGGGGACGTCACAAGAAGACTTACTTTCTGATGATGCTCAAGCCAAAACGGAACAGTTCAAT
CGTCAAGTGGTTGAGCGCGTAAAACGTCAAATGCAGCTCTATACCTCGATCAACGGTTCACAAAACATCAAAGGCATTTG
GTTATCGGGCGAGGGGGCATCGACGCCAATTTTGGCAGAAGAGCTCTCGCATCAGTTGGCATTGGAGTGCGAGTTGCTAA
ACCCACTCGGACTGTTTGAAATGAAAGTGTCGAAACGCAAGCGCCGAGCGGCCGATTGGCAACATTTTTCGACGGCTGCA
GGGCTGGCGGTGCGTGGCATTCATTGGTTAGGAGGTGTGCGTGCTGTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

84.911

100

0.849
  pilM Vibrio cholerae strain A1552

48.368

99.704

0.482

Multiple sequence alignment