Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   H1X63_RS06980 Genome accession   NZ_LR822027
Coordinates   1347480..1349456 (-) Length   658 a.a.
NCBI ID   WP_180487728.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_998     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342480..1354456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X63_RS06960 (STHERMO_1519) - 1342981..1343907 (-) 927 WP_179972088.1 ATP-binding cassette domain-containing protein -
  H1X63_RS06965 (STHERMO_1520) amiE 1343900..1344985 (-) 1086 WP_179972089.1 ABC transporter ATP-binding protein Regulator
  H1X63_RS06970 (STHERMO_1521) amiD 1344995..1345921 (-) 927 WP_179972090.1 oligopeptide ABC transporter permease OppC Regulator
  H1X63_RS06975 (STHERMO_1522) amiC 1345921..1347414 (-) 1494 WP_180487727.1 ABC transporter permease Regulator
  H1X63_RS06980 (STHERMO_1523) amiA3 1347480..1349456 (-) 1977 WP_180487728.1 peptide ABC transporter substrate-binding protein Regulator
  H1X63_RS06985 - 1349692..1349882 (-) 191 Protein_1315 IS3 family transposase -
  H1X63_RS11100 - 1349876..1350286 (-) 411 Protein_1316 ATP-binding cassette domain-containing protein -
  H1X63_RS11105 (STHERMO_1526) - 1350384..1350632 (-) 249 Protein_1317 TatD family hydrolase -
  H1X63_RS07005 (STHERMO_1527) - 1350981..1352174 (+) 1194 WP_100262689.1 OFA family MFS transporter -
  H1X63_RS07010 - 1352234..1353584 (-) 1351 Protein_1319 IS3 family transposase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72324.33 Da        Isoelectric Point: 5.2731

>NTDB_id=1010422 H1X63_RS06980 WP_180487728.1 1347480..1349456(-) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_998]
MKKSKWLALAGVALLGVGVLTACSSKSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPS
VAEDWSVSKDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVG
VKAIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWD
KKNVHFDAIKLSYYDGSDQDALVRGFTDGAYNIARVFPTSSNYASVEKKYKDNIYYTVPGASTSAIGINIDRQSYKYTAK
KTDSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLGVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGV
NFADGQDGLYNDEKAKTEFAKAKEALQGEGVQFPVHLDLPVDQSSKLNVAQAQSLKQTIEKSLGKDNVVIDINQLSSDDL
ENATLNAANAAAEDWDISNGVGWGPDYQDPSTYLDILKTTSSENTKTFNGYDDPNNAAAVQVGLKDYDALLNSAASETSD
LNVRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLKPFTGASIQVGDKNSSDYLKYVKPQEKVVTKKEYEQSREKWLK
EKKESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1010422 H1X63_RS06980 WP_180487728.1 1347480..1349456(-) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_998]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAACGGCTTGTTCATCTAAATC
TAAATCAAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATA
CGGGACCTACAAAAACTGCTGTGACAAATGGCGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCA
GTAGCTGAAGATTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGGTCAAATGGTATACTTC
TGATGGTGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGACTCCAAAGCAGGTG
GTATCTATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGT
GTCAAGGCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAG
TTTGCTTTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCC
TTTATAATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGAC
AAGAAAAATGTACACTTTGATGCTATCAAATTATCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCAC
TGATGGTGCTTATAATATTGCTCGTGTCTTTCCAACGAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATA
TTTATTACACAGTACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAA
AAGACGGATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGA
CCGTAAGGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGGTGTTCGTAACCTCTTTGTGCCTTCTGATT
TTGTCAGTGCAGGCGATAAGACCTTTGGTGATCTTGTGACAGAAAAAATGAGCTCTTATGGTGATGAGTGGTCTGGTGTT
AACTTTGCAGATGGTCAAGACGGTCTCTACAATGATGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAGGCTCTTCA
AGGAGAAGGGGTACAATTCCCAGTTCACTTAGACCTTCCAGTTGATCAAAGCTCTAAACTTAATGTTGCCCAAGCCCAAT
CTTTGAAACAAACCATTGAAAAATCATTGGGAAAGGACAATGTGGTGATTGATATTAACCAATTGTCATCTGATGATTTG
GAAAATGCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCTAACGGTGTGGGTTGGGGTCCAGACTA
TCAAGATCCATCAACTTATCTTGATATCTTAAAAACAACATCAAGTGAAAATACCAAGACTTTCAATGGTTATGATGATC
CAAATAATGCGGCAGCAGTCCAAGTAGGACTCAAAGACTATGATGCCTTGCTTAATTCTGCAGCTTCAGAAACAAGTGAC
CTTAATGTTCGTTATGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGG
TAATGGTGCGGCACCAGTTATCTCACGCTTGAAACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAG
ACTACTTAAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAA
GAAAAGAAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

95.144

100

0.953
  amiA3 Streptococcus thermophilus LMG 18311

94.841

100

0.95
  amiA Streptococcus salivarius strain HSISS4

90.274

100

0.903