Detailed information NTG1010230

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: H1X08_RS09620
• Genome accession: NZ_LR822025
• Coordinates: 1878242..1878670 (-)
• Length: 142 a.a.
• NCBI ID: WP_269473123.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_961
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1873242..1883670

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1X08_RS09585 (STHERMO_2192)	-	1873354..1874016 (-)	663	WP_179972338.1	CPBP family intramembrane glutamic endopeptidase	-
H1X08_RS11435 (STHERMO_2194)	-	1874113..1874554 (-)	442	Protein_1851	CAAX protease	-
H1X08_RS09590 (STHERMO_2195)	-	1874566..1874763 (-)	198	WP_179972339.1	helix-turn-helix transcriptional regulator	-
H1X08_RS09595 (STHERMO_2196)	-	1875011..1876204 (-)	1194	WP_179972340.1	acetate kinase	-
H1X08_RS09600 (STHERMO_2197)	comGH	1876260..1877216 (-)	957	WP_179972341.1	class I SAM-dependent methyltransferase	Machinery gene
H1X08_RS09605 (STHERMO_2198)	comGG	1877267..1877578 (-)	312	WP_179972342.1	competence type IV pilus minor pilin ComGG	Machinery gene
H1X08_RS09610 (STHERMO_2199)	comGF	1877556..1877993 (-)	438	WP_179972343.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1X08_RS09615 (STHERMO_2200)	comGE	1877977..1878270 (-)	294	WP_179972344.1	competence type IV pilus minor pilin ComGE	Machinery gene
H1X08_RS09620 (STHERMO_2201)	comGD	1878242..1878670 (-)	429	WP_269473123.1	competence type IV pilus minor pilin ComGD	Machinery gene
H1X08_RS09625 (STHERMO_2202)	comGC	1878630..1878956 (-)	327	WP_179972346.1	competence type IV pilus major pilin ComGC	Machinery gene
H1X08_RS09630 (STHERMO_2203)	comGB	1878953..1880053 (-)	1101	WP_179973355.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1X08_RS09635 (STHERMO_2204)	comGA/cglA/cilD	1879935..1880876 (-)	942	WP_179972347.1	competence type IV pilus ATPase ComGA	Machinery gene
H1X08_RS09640 (STHERMO_2205)	-	1880957..1881319 (-)	363	WP_180482294.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15845.42 Da
• Isoelectric Point: 10.3330

>NTDB_id=1010230 H1X08_RS09620 WP_269473123.1 1878242..1878670(-) (comGD) [Streptococcus thermophilus isolate STH_CIRM_961]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLVPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=1010230 H1X08_RS09620 WP_269473123.1 1878242..1878670(-) (comGD) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGCGAAACATGGTAGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTCTATCTGC
GTTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTGTTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Streptococcus mutans UA159	51.908	92.254	0.479
comGD	Streptococcus mutans UA140	51.908	92.254	0.479
comGD/cglD	Streptococcus pneumoniae D39	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae R6	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	44.882	89.437	0.401
comGD/cglD	Streptococcus mitis NCTC 12261	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Streptococcus gordonii str. Challis substr. CH1	40.714	98.592	0.401
comGD/cglD	Streptococcus mitis SK321	44.094	89.437	0.394
comGD	Lactococcus lactis subsp. cremoris KW2	40.152	92.958	0.373