Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ABOA58_RS18085 Genome accession   NZ_CP158190
Coordinates   3695996..3697072 (-) Length   358 a.a.
NCBI ID   WP_350302910.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LSJ146     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3690996..3702072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOA58_RS18045 (ABOA58_18000) - 3691862..3692659 (+) 798 WP_350299462.1 YqhG family protein -
  ABOA58_RS18050 (ABOA58_18005) - 3692706..3692891 (-) 186 WP_063233067.1 YqzE family protein -
  ABOA58_RS18055 (ABOA58_18010) comGG 3693003..3693389 (-) 387 WP_350299463.1 competence type IV pilus minor pilin ComGG -
  ABOA58_RS18060 (ABOA58_18015) comGF 3693382..3693864 (-) 483 WP_350299464.1 competence type IV pilus minor pilin ComGF -
  ABOA58_RS18065 (ABOA58_18020) - 3693812..3694150 (-) 339 WP_350299465.1 hypothetical protein -
  ABOA58_RS18070 (ABOA58_18025) comGD 3694137..3694595 (-) 459 WP_350299466.1 competence type IV pilus minor pilin ComGD -
  ABOA58_RS18075 (ABOA58_18030) comGC 3694588..3694899 (-) 312 WP_063233178.1 competence type IV pilus major pilin ComGC -
  ABOA58_RS18080 (ABOA58_18035) comGB 3694978..3696012 (-) 1035 WP_350299467.1 competence type IV pilus assembly protein ComGB -
  ABOA58_RS18085 (ABOA58_18040) comGA 3695996..3697072 (-) 1077 WP_350302910.1 competence type IV pilus ATPase ComGA Machinery gene
  ABOA58_RS18090 (ABOA58_18045) - 3697177..3697557 (-) 381 WP_350299468.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ABOA58_RS18095 (ABOA58_18050) - 3697773..3698474 (+) 702 WP_350299469.1 helix-turn-helix domain-containing protein -
  ABOA58_RS18100 (ABOA58_18055) - 3698560..3698802 (+) 243 WP_076365317.1 DUF2626 domain-containing protein -
  ABOA58_RS18105 (ABOA58_18060) - 3698855..3699955 (-) 1101 WP_350299470.1 SAM-dependent methyltransferase -
  ABOA58_RS18110 (ABOA58_18065) - 3700287..3700913 (-) 627 WP_350299471.1 MBL fold metallo-hydrolase -
  ABOA58_RS18115 (ABOA58_18070) - 3701147..3701320 (+) 174 WP_101222560.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39926.66 Da        Isoelectric Point: 8.7532

>NTDB_id=1010230 ABOA58_RS18085 WP_350302910.1 3695996..3697072(-) (comGA) [Peribacillus frigoritolerans strain LSJ146]
MISIEKTAEKILTRAIQESASDIHIFFRREGPLIQFRIDNKLVPQETLSFFEAERLIAHLKFLASMDIGEKRRPQSGALT
IKLANQVVGLRLSTLPTAHLESLVIRLIPQQNILPLEQLSLFPNTVQKLIALLKHSHGMLIFTGPTGSGKTTTLYSLLHH
AHEMINRNIITLEDPIENVSEKVLQVQINEKAGITYSVGLKAVLRHDPDVIMVGEVRDAETAKIAVRAALTGHLILTTMH
TRDAKGAISRLLEFGVSLLEVEQSLIGVTAQRLVELRCLPCKGDCAFACKMTARNKRASVYELLYGKSLAEVLRIMGDEK
GMATVGYRQLKDEIGKAVAMGYVDSEEYERLVYHETKK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1010230 ABOA58_RS18085 WP_350302910.1 3695996..3697072(-) (comGA) [Peribacillus frigoritolerans strain LSJ146]
TTGATATCGATTGAAAAGACCGCAGAAAAAATATTAACCCGTGCCATTCAGGAATCTGCATCGGATATCCACATTTTTTT
TCGGAGGGAGGGACCTCTCATCCAATTCAGGATAGACAATAAGCTTGTACCCCAGGAAACATTATCATTCTTTGAAGCTG
AGAGGCTGATCGCTCATTTGAAGTTCCTTGCCTCGATGGATATAGGGGAGAAAAGGAGGCCCCAGAGTGGTGCCCTCACC
ATTAAATTGGCTAACCAGGTTGTCGGACTCCGCCTTTCCACTTTACCCACTGCCCATCTCGAAAGTTTGGTCATCCGTTT
AATACCCCAACAGAATATCCTCCCTCTCGAACAGTTATCCTTATTTCCAAACACCGTCCAAAAATTGATTGCACTCCTGA
AGCATTCCCATGGCATGCTTATTTTTACCGGCCCGACCGGCAGTGGAAAAACCACGACATTATATTCCCTGCTTCACCAT
GCCCACGAAATGATCAATCGAAATATCATTACACTTGAAGATCCCATTGAAAATGTATCCGAAAAGGTACTGCAAGTCCA
AATCAATGAAAAGGCGGGCATTACGTATTCTGTAGGTCTAAAAGCTGTCCTGAGACATGACCCCGACGTGATTATGGTTG
GGGAAGTCAGGGATGCAGAAACTGCCAAAATTGCAGTGCGTGCCGCATTAACCGGTCATTTGATACTTACAACCATGCAT
ACAAGGGATGCCAAGGGAGCCATCTCCAGGTTACTGGAATTTGGTGTCAGCTTGCTTGAGGTTGAACAGAGTTTGATTGG
CGTGACAGCACAGCGGCTGGTTGAATTGCGATGTCTTCCATGTAAAGGGGACTGTGCTTTTGCTTGCAAAATGACTGCCA
GGAATAAAAGGGCCAGTGTATATGAATTGCTCTATGGAAAAAGCCTGGCTGAGGTTCTCAGGATAATGGGAGATGAAAAA
GGAATGGCAACGGTAGGCTACCGCCAATTGAAGGATGAAATCGGAAAAGCGGTTGCGATGGGCTATGTGGATTCAGAGGA
ATATGAACGGCTGGTATACCATGAAACCAAAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.583

99.721

0.564
  pilB Haemophilus influenzae 86-028NP

39.368

97.207

0.383
  pilB Haemophilus influenzae Rd KW20

38.218

97.207

0.372
  pilB Glaesserella parasuis strain SC1401

37.216

98.324

0.366

Multiple sequence alignment