Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABNG17_RS19645 Genome accession   NZ_CP158181
Coordinates   3690022..3690567 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus strain RI06-95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3685022..3695567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS19620 (ABNG17_19605) - 3685287..3685895 (-) 609 WP_034620304.1 alpha/beta hydrolase -
  ABNG17_RS19625 (ABNG17_19610) - 3685892..3686863 (-) 972 WP_284907703.1 ring-cleaving dioxygenase -
  ABNG17_RS19630 (ABNG17_19615) opuFB 3687055..3688572 (-) 1518 WP_137054091.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  ABNG17_RS19635 (ABNG17_19620) - 3688565..3689530 (-) 966 WP_350303691.1 ABC transporter ATP-binding protein -
  ABNG17_RS19640 (ABNG17_19625) rpsR 3689742..3689981 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  ABNG17_RS19645 (ABNG17_19630) ssbA 3690022..3690567 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  ABNG17_RS19650 (ABNG17_19635) rpsF 3690604..3690891 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  ABNG17_RS19655 (ABNG17_19640) ychF 3691000..3692100 (-) 1101 WP_268459986.1 redox-regulated ATPase YchF -
  ABNG17_RS19660 (ABNG17_19645) - 3692317..3692523 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  ABNG17_RS19665 (ABNG17_19650) - 3692818..3694137 (+) 1320 WP_050944672.1 hydrolase -
  ABNG17_RS19670 (ABNG17_19655) - 3694153..3694563 (+) 411 WP_003215287.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=1010159 ABNG17_RS19645 WP_003215157.1 3690022..3690567(-) (ssbA) [Bacillus pumilus strain RI06-95]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1010159 ABNG17_RS19645 WP_003215157.1 3690022..3690567(-) (ssbA) [Bacillus pumilus strain RI06-95]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment