Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABNG17_RS15055 Genome accession   NZ_CP158181
Coordinates   2801459..2802100 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus pumilus strain RI06-95     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2796459..2807100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS15020 (ABNG17_15005) - 2797591..2798022 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  ABNG17_RS15025 (ABNG17_15010) - 2798022..2798363 (+) 342 WP_350303502.1 Na(+)/H(+) antiporter subunit C -
  ABNG17_RS15030 (ABNG17_15015) - 2798356..2799834 (+) 1479 WP_350303503.1 Na+/H+ antiporter subunit D -
  ABNG17_RS15035 (ABNG17_15020) - 2799841..2800320 (+) 480 WP_310425839.1 Na+/H+ antiporter subunit E -
  ABNG17_RS15040 (ABNG17_15025) - 2800320..2800601 (+) 282 WP_012011105.1 Na(+)/H(+) antiporter subunit F1 -
  ABNG17_RS15045 (ABNG17_15030) mnhG 2800585..2800959 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  ABNG17_RS15050 (ABNG17_15035) - 2801046..2801435 (-) 390 WP_106066313.1 hotdog fold thioesterase -
  ABNG17_RS15055 (ABNG17_15040) comA 2801459..2802100 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  ABNG17_RS15060 (ABNG17_15045) comP 2802181..2804493 (-) 2313 WP_350303504.1 ATP-binding protein Regulator
  ABNG17_RS15065 (ABNG17_15050) comX 2804548..2804718 (-) 171 WP_212045489.1 competence pheromone ComX -
  ABNG17_RS15070 (ABNG17_15055) - 2804715..2805629 (-) 915 WP_212045490.1 polyprenyl synthetase family protein -
  ABNG17_RS15075 (ABNG17_15060) degQ 2805781..2805921 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  ABNG17_RS15080 (ABNG17_15065) - 2806427..2806780 (+) 354 WP_050944043.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=1010145 ABNG17_RS15055 WP_003213500.1 2801459..2802100(-) (comA) [Bacillus pumilus strain RI06-95]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1010145 ABNG17_RS15055 WP_003213500.1 2801459..2802100(-) (comA) [Bacillus pumilus strain RI06-95]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGGAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment